Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-WRKY40.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80840 292 / 2e-98 WRKY ATWRKY40, WRKY40 WRKY DNA-binding protein 40 (.1) AT4G31800 227 / 8e-73 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) AT2G25000 196 / 2e-61 WRKY ATWRKY60, WRKY60 WRKY DNA-binding protein 60 (.1) AT4G22070 105 / 3e-25 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT1G62300 105 / 4e-25 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT1G68150 103 / 4e-25 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT4G01720 103 / 1e-24 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT4G04450 102 / 3e-24 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT1G18860 100 / 3e-23 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT5G15130 99 / 6e-23 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G182200 [exp] 460 / 3e-164 AT1G80840 293 / 1e-98 WRKY DNA-binding protein 40 (.1) Potri.018G019800 [exp] 268 / 9e-89 AT1G80840 263 / 7e-87 WRKY DNA-binding protein 40 (.1) Potri.006G263600 [exp] 261 / 7e-86 AT4G31800 244 / 2e-79 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) Potri.018G019700 [exp] 150 / 2e-43 AT1G80840 137 / 9e-39 WRKY DNA-binding protein 40 (.1) Potri.002G186600 [exp] 107 / 7e-26 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.014G111900 [exp] 105 / 4e-25 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.017G079500 [exp] 104 / 9e-25 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.001G208600 [exp] 104 / 9e-25 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.014G155100 [exp] 104 / 1e-24 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024074 [exp] 315 / 2e-106 AT1G80840 291 / 3e-97 WRKY DNA-binding protein 40 (.1) Lus10041660 [exp] 299 / 2e-100 AT1G80840 279 / 1e-92 WRKY DNA-binding protein 40 (.1) Lus10026082 [exp] 290 / 8e-97 AT1G80840 286 / 2e-95 WRKY DNA-binding protein 40 (.1) Lus10002309 [exp] 289 / 2e-96 AT1G80840 293 / 2e-98 WRKY DNA-binding protein 40 (.1) Lus10021554 [exp] 109 / 2e-26 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10024246 [exp] 106 / 3e-25 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10036725 [exp] 105 / 3e-25 AT5G15130 227 / 6e-68 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10037205 [exp] 105 / 3e-25 AT5G15130 225 / 2e-67 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10015546 [exp] 103 / 5e-25 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10035286 [exp] 103 / 2e-24 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G044500.1 pacid=42789590 polypeptide=Potri.001G044500.1.p locus=Potri.001G044500 ID=Potri.001G044500.1.v4.1 annot-version=v4.1 ATGGATAACTCATCCTGGGTTGATACTTCTTTGGATCTTAATATTAATCCTCTAAGAGTGAAAAGCGATGCTCCAGTTGATGCAGAAAGTTTTGGGGTAC CAAGAAAAATGAAACCCACTTTCATGTTCCAGACCAAGCCTTCAGCGAAAGAAGAGACTGGAGCCATAGAAGAGGAATTGAACCGAGTGAGCGAAGAAAA CAGGAAGCTCACTGAAATGCTAACTGTGATGTGTGAGAACTACAATGCTTTAAGAAACCAGTTGATGGATTGCATGTGCAAGAATGGAGAAAAGGAGCTT CATGGCCCATCAAAGAAAAGAAAGTCTGCAAGCAACAACAACAACGATAATAACATTGCAATGAATGGGAACTCTGAGAGTAGCTCAACCGATGAAGAAT TGTCCAAGAAACCAAGGGAAGAAGTCATCAAAGCTAAGACTTCCAGGGCTTATGTCAAGACTGAAGCGGGTGATAAAAGCCTTATCGTGAAAGATGGATA TCAATGGAGGAAATATGGCCAAAAGGTCACAAGAGATAACCCTTCTCCAAGAGCTTACTTCAAATGCTCTTTTGCTCCAAGCTGCCCTGTCAAGAAGAAG GTTCAAAGGAGCATTGACGACCAATCTGTTCTGGTGGCAACTTATGAAGGAGAGCACAACCATCCACACCCCTCAATGGAGGCAACATCAGGTTCAAGCC ATGGTCTAACACTCGGTTCAGTACCCTGCTCCGCTTCTCTAGCCTCATCTGGGAAAACCAATATTACTCTCGACCTCACAAAATCTAAGTCCAGCAATGA TGCCAAAAGTTCAAAACCAAAAACTGATGCACCTGAAGTCCGGCAATTCTTGGTGGAACAGATGGCCTCTTCGTTGACGAAAGATCCCAATTTCACAGCA GCACTGGCCGCAGCAATCTCAGGAAGAATGTTGCAGCAAAATCACACTAAGTGGTGA
AA sequence Show only first row Show all	>Potri.001G044500.1 pacid=42789590 polypeptide=Potri.001G044500.1.p locus=Potri.001G044500 ID=Potri.001G044500.1.v4.1 annot-version=v4.1 MDNSSWVDTSLDLNINPLRVKSDAPVDAESFGVPRKMKPTFMFQTKPSAKEETGAIEEELNRVSEENRKLTEMLTVMCENYNALRNQLMDCMCKNGEKEL HGPSKKRKSASNNNNDNNIAMNGNSESSSTDEELSKKPREEVIKAKTSRAYVKTEAGDKSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKK VQRSIDDQSVLVATYEGEHNHPHPSMEATSGSSHGLTLGSVPCSASLASSGKTNITLDLTKSKSSNDAKSSKPKTDAPEVRQFLVEQMASSLTKDPNFTA ALAAAISGRMLQQNHTKW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.001G044500 [exp]	0	1	Pt-WRKY40.1
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.011G057000 [exp]	2.00	0.9222
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Potri.001G298300 [exp]	3.00	0.9344	3
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.001G219100 [exp]	7.34	0.9245
AT2G27310			F-box family protein (.1)		Potri.009G160700 [exp]	8.48	0.9255
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Potri.003G159800 [exp]	9.21	0.9203
AT4G37640		ACA2	calcium ATPase 2 (.1)		Potri.007G055500 [exp]	12.24	0.9164	Pt-ACA2.1
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Potri.001G154100 [exp]	14.28	0.9016
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Potri.011G131100 [exp]	16.24	0.9092
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088290 [exp]	17.14	0.9157
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.001G062500 [exp]	17.29	0.9016

Compare expression of checked genes

Potri.001G044500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.