Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21090 259 / 6e-89 ATMFDX2 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MITOCHONDRIAL FERREDOXIN 2 (.1.2.3) AT4G05450 245 / 2e-83 ATMFDX1 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 1, mitochondrial ferredoxin 1 (.1) AT3G07480 40 / 0.0002 2Fe-2S ferredoxin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G182100 [exp] 375 / 1e-134 AT4G21090 260 / 2e-89 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MITOCHONDRIAL FERREDOXIN 2 (.1.2.3) Potri.002G239000 [exp] 46 / 3e-06 AT3G07480 236 / 5e-81 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.014G177100 [exp] 39 / 0.0008 AT3G07480 239 / 2e-82 2Fe-2S ferredoxin-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038832 [exp] 233 / 8e-78 AT4G21090 216 / 4e-71 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MITOCHONDRIAL FERREDOXIN 2 (.1.2.3) Lus10014947 [exp] 218 / 4e-72 AT4G21090 216 / 8e-72 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MITOCHONDRIAL FERREDOXIN 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0486 [poplar] [flax] Fer2 PF00111 [poplar] [flax] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G044700.2 pacid=42791111 polypeptide=Potri.001G044700.2.p locus=Potri.001G044700 ID=Potri.001G044700.2.v4.1 annot-version=v4.1 ATGTTAAGGTCTAGACTTTCAAGAATTGGAGCTGGGATAGTCAAAGAACTCTCAAGAGGACAATGTACAGCCATGTGTAGATCATCATTTATACTAAGGC CGTATAGTGCATGTTGGCGACCTCAGGTTGAATTACACCCAGAAACTAAGGGTTTCCAAGGTACTATATTTCGAAAGCATTACCAGTTCTCTAGCACAGC TACCAGTAGTGATTCTGCAAATGGCAGTGACCCAGAGGAGATGATATCCATAACATTTGTAGGTAAGGACGGGGAGGAAAAGGATATCAAGGTCCCTGTT GGAATGTCCATGTTAGAAGCTGCTCATGAAAATGATATAGAACTTGAAGGAGCATGTGAAGGCTCACTTGCTTGTTCGACGTGTCATGTGATTGTGATGG ACATGGAATACTACAACAAATTAGAAGACCCAGCTGATGAGGAGAATGACATGTTGGATTTGGCATTTGGGCTTACAGAAACTTCCCGTCTGGGTTGTCA AGTGATTGCAAAGCCTGAGCTCAATGGAATGCGCCTAGCTATTCCTGCTGCCACTCGTAATTTTGCCGTTGATGGGTATGTTCCAAAACCACACTAG
AA sequence Show only first row Show all	>Potri.001G044700.2 pacid=42791111 polypeptide=Potri.001G044700.2.p locus=Potri.001G044700 ID=Potri.001G044700.2.v4.1 annot-version=v4.1 MLRSRLSRIGAGIVKELSRGQCTAMCRSSFILRPYSACWRPQVELHPETKGFQGTIFRKHYQFSSTATSSDSANGSDPEEMISITFVGKDGEEKDIKVPV GMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMEYYNKLEDPADEENDMLDLAFGLTETSRLGCQVIAKPELNGMRLAIPAATRNFAVDGYVPKPH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.001G044700 [exp]	0	1
AT2G46230			PIN domain-like family protein...		Potri.002G166200 [exp]	1.73	0.8344
AT3G03750		SUVR3, SDG20	SET domain protein 20 (.1.2)		Potri.013G064600 [exp]	1.73	0.8428	SDG935
AT4G15850		ATRH1	RNA helicase 1 (.1)		Potri.004G158000 [exp]	2.82	0.8402	ATRH1.1
AT5G07610			F-box family protein (.1)		Potri.008G016150 [exp]	6.92	0.8241
AT4G24290			MAC/Perforin domain-containing...		Potri.003G006500 [exp]	7.07	0.8234
AT5G12410			THUMP domain-containing protei...		Potri.009G049700 [exp]	7.74	0.7949
AT3G10110		MEE67	maternal effect embryo arrest ...		Potri.001G281200 [exp]	8.00	0.8046
					Potri.003G027318 [exp]	10.95	0.8214
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G011000 [exp]	11.00	0.7952
					Potri.003G027116 [exp]	12.40	0.8188

Compare expression of checked genes

Potri.001G044700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.