Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15950 510 / 0 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT1G80820 498 / 1e-178 CCR2, ATCCR2 cinnamoyl coa reductase (.1) AT5G19440 287 / 6e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 273 / 2e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 251 / 6e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 251 / 2e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 250 / 2e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G02400 250 / 2e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 244 / 4e-79 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G33590 244 / 5e-79 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G046100 [exp] 655 / 0 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 626 / 0 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045000 [exp] 614 / 0 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045100 [exp] 612 / 0 AT1G15950 483 / 9e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.003G181400 [exp] 598 / 0 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045800 [exp] 426 / 3e-151 AT1G15950 350 / 1e-121 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G256400 [exp] 287 / 8e-96 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045600 [exp] 278 / 1e-94 AT1G15950 227 / 4e-75 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.009G052000 [exp] 282 / 9e-94 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041651 [exp] 556 / 0 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10024068 [exp] 545 / 0 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10030973 [exp] 485 / 1e-173 AT1G15950 457 / 1e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10035369 [exp] 481 / 9e-172 AT1G15950 456 / 6e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10009955 [exp] 281 / 2e-93 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026385 [exp] 273 / 4e-90 AT5G58490 533 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 263 / 3e-86 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 246 / 9e-80 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 246 / 1e-79 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 239 / 6e-77 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.001G046400.1 pacid=42791526 polypeptide=Potri.001G046400.1.p locus=Potri.001G046400 ID=Potri.001G046400.1.v4.1 annot-version=v4.1 ATGCCTGTCGATACTTCATCACTTCCATGCCAAGGCCAAACTGTCTGTGTCACCGGGGCTGGTGGCTTCATTGCTTCATGGATTGTTAAACTTCTTCTAG AGAAAGGTTACTCTGTTAAAGGAACTGTGAGGAACCCAGCTGATCCCAAGAATTCCCATTTGAGGGAGCTTGAGGGAGCTCAAGAAAGATTAACTTTATG CAAGGCTGATCTCCTTGATTATGAGTCTCTTAAAGAGGCTATTCAAGGGTGTGATGGAGTTTTCCATACTGCTTCTCCTGTCACAGACGATCCAGAGCAA ATGCTGGAGCCAGCAGTGAATGGAACCAAGAATGTGATCATGGCAGCAGCTGAGGCCCAAGTCCGACGAGTGGTTTTCACGTCTTCAATTGGTACTGTGT ACATGGACCCCAATAGGAGCCCTGATGTTGTCGTTGATGAATCTTGCTGGAGTGATCTTGAGTTCTGCAAGAACACCAAGAATTGGTATTGCTATGGAAA GACTGTGGCGGAACAGGATGCATGGGATGTGGCTAAGAAGAATGGAGTTGACCTAGTGGTGGTGAACCCAGTGCTGGTGCTTGGACCATTGTTGCAACCC ACTGTCAATGCTAGCATCGTTCACATCCTCAAGTACCTAACCGGCTCAGCCAAGACATATGCTAACTCTGTTCAAGCTTATGTGCATGTTAAGGATGTGG CACTAGCCCACATTTTAGTCTTCGAGACACCTTCCGCCTCCGGCCGTTACATTTGCGCTGAGAGAATGCTCCACCGTGGAGAGGTGGTGGAAATCCTTGC AAAGTTCTTCCCGGAGTATCCCATCCCCACCAAGTGTTCAGATGAGAAGAACCCAAGAAAACAACCCTACAAGTTCACAAACCAGAAGATCAAGGATCTG GGCATCGAATTCACACCAGTGAAACAGTGCCTGTATGAATCTGTTAAGAGCTTGCAGGAAAAGGGTCACCTTCCAATCCCAAAACAAGCTGAAGACTCTG TGAAAATTCAATAA
AA sequence Show only first row Show all	>Potri.001G046400.1 pacid=42791526 polypeptide=Potri.001G046400.1.p locus=Potri.001G046400 ID=Potri.001G046400.1.v4.1 annot-version=v4.1 MPVDTSSLPCQGQTVCVTGAGGFIASWIVKLLLEKGYSVKGTVRNPADPKNSHLRELEGAQERLTLCKADLLDYESLKEAIQGCDGVFHTASPVTDDPEQ MLEPAVNGTKNVIMAAAEAQVRRVVFTSSIGTVYMDPNRSPDVVVDESCWSDLEFCKNTKNWYCYGKTVAEQDAWDVAKKNGVDLVVVNPVLVLGPLLQP TVNASIVHILKYLTGSAKTYANSVQAYVHVKDVALAHILVFETPSASGRYICAERMLHRGEVVEILAKFFPEYPIPTKCSDEKNPRKQPYKFTNQKIKDL GIEFTPVKQCLYESVKSLQEKGHLPIPKQAEDSVKIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G046400 [exp]	0	1
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G046100 [exp]	1.00	0.9932
AT4G06744			Leucine-rich repeat (LRR) fami...		Potri.001G302500 [exp]	1.41	0.9829
					Potri.001G045301 [exp]	3.46	0.9807
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045600 [exp]	7.21	0.9791
AT3G20340			unknown protein		Potri.011G003100 [exp]	13.85	0.9644
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G142000 [exp]	14.07	0.9482
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Potri.015G145100 [exp]	17.46	0.9703
					Potri.007G133200 [exp]	21.00	0.8694
					Potri.001G045901 [exp]	21.97	0.9452
AT5G44400			FAD-binding Berberine family p...		Potri.011G159100 [exp]	23.23	0.9693

Compare expression of checked genes

Potri.001G046400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.