Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31880 268 / 6e-77 unknown protein AT1G15940 266 / 2e-75 Tudor/PWWP/MBT superfamily protein (.1) AT1G80810 251 / 2e-71 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G47690 146 / 2e-35 binding (.1.2.3) AT5G10950 101 / 1e-22 Tudor/PWWP/MBT superfamily protein (.1) AT1G77600 93 / 4e-19 ARM repeat superfamily protein (.1.2.3) AT4G32620 62 / 2e-09 Enhancer of polycomb-like transcription factor protein (.1.2) AT4G02070 59 / 1e-08 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT4G32970 54 / 5e-07 unknown protein AT1G05830 49 / 1e-05 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G181300 [exp] 1164 / 0 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.006G263300 [exp] 293 / 1e-84 AT4G31880 424 / 8e-133 unknown protein Potri.018G020400 [exp] 273 / 6e-78 AT4G31880 389 / 3e-120 unknown protein Potri.018G109600 [exp] 200 / 5e-54 AT4G31880 180 / 3e-47 unknown protein Potri.006G186700 [exp] 183 / 5e-48 AT4G31880 167 / 8e-43 unknown protein Potri.016G005400 [exp] 150 / 9e-37 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.006G004750 [exp] 136 / 2e-32 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.002G084300 [exp] 113 / 3e-25 AT1G77600 1136 / 0.0 ARM repeat superfamily protein (.1.2.3) Potri.006G246200 [exp] 59 / 2e-08 AT4G32620 1021 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018332 [exp] 278 / 8e-80 AT4G31880 464 / 2e-149 unknown protein Lus10017121 [exp] 268 / 2e-76 AT4G31880 473 / 2e-152 unknown protein Lus10026078 [exp] 239 / 2e-70 AT4G31880 228 / 1e-66 unknown protein Lus10002307 [exp] 233 / 2e-67 AT4G31880 214 / 4e-61 unknown protein Lus10038777 [exp] 157 / 1e-38 AT5G47690 1579 / 0.0 binding (.1.2.3) Lus10039082 [exp] 147 / 7e-36 AT5G47690 1661 / 0.0 binding (.1.2.3) Lus10025655 [exp] 86 / 9e-17 AT1G77600 899 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10018180 [exp] 85 / 2e-16 AT1G77600 864 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10021959 [exp] 57 / 7e-08 AT4G32620 870 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Lus10041252 [exp] 57 / 8e-08 AT4G32620 923 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G046500.3 pacid=42791406 polypeptide=Potri.001G046500.3.p locus=Potri.001G046500 ID=Potri.001G046500.3.v4.1 annot-version=v4.1 ATGCCTTACAGTGAGACTGAGCTTCAAGAACGGCTCAAAGAGGCTGGAAAAAGTCTCTTAAACCCTCCATCATCTGTTAATGAGCTTCTTGACTTGCTTG ATAAACTTGAGCGTTTCCTTGCAAATGTGGAGCAAGCACCACCAAGATCAATGCAAGATGCTCTTTTGCCTACAATGAAGGCATTAATCTCTAGTGCCCT TTTAAGGCACTCAGACGAAGATGTAAGGTTTGCAGTTGCATCTTGCACGAGTGAGATTACAAGAATAACAGCACCAGATGCTCCTTACAATGATGACCAA ATGAAGGAAATTTTTCAATTGACAGTAGCATCTTTTGAAAAATTATCCCAAACATCCGGTCATTGTTATACAAAGGCAGTTTCTATTCTTGAGAATGTAG CAAGGGTGAGGTCATGCTTGGTGATGCTGGACCTGGAGTTGGATGAACTAATTATAGAGATGTTCCAACACTTTCTGAAATTCATCAGGTCCAACCATCC AAAAACTGTAATCTTAGCCATGGAAACAATTATGACCCTGGTCATTGATGAAAGTGAAGAAATCTCAGCAGAGCTTCTCACTCTACTTTTAGCGAGTGTA AAAAAGCAAAACCAGAGTGTTTCTCCTATGGCATGGGAGCTTGGGGAAAGAGTTATCACTAATAGTGCTGCTAAACTTAAGCCCTATCTCAAGGAAGCAG TGCAGTCTACAGGCATACTTTTGGATGAATATGCTCCAATAGTTGCTTCTATATTCCAAGATGACTCTTGCACACTCGAAGGTGATTATAGCAATCGTTC TGGGGAACATTTGGGATTATCACCAAATGCTGCTTGCCAGGGAGAGATTTTTGAAGGCAAGGATGTGATTCCGAAGTCAAAAGCAAGCAAAGGAACTGCT TCAACTAGAAATGCCAGGACTGTCAAAAAGGATAATGCTTCAAAAATGCTAGACCCTTGCTCTCTTACCGAGCATTCTAAAAGCACTGATGCACAGGACA AAGCTGAACCTAAAGTCAGGTTAGAAAAGGAGCCAAAGACCGTTCCAAGTAAAAGGGGCTGGAAACCTAATTCTTTGATGAATCCAGAAGAAGGCTACGA TCCTTGGTTTAATACAGGAAGAAAAACTACTAAACTTCCCCGTGAAAAACGTCATGATAAAGGCACTGATGTTTTACCCTCAGAAACTCCAGTTTCCAAG AAGGTAGCTTTGTCATTAAAACATTTGAGTGTGACAAAACCAACAGGATTTACCCCAAAAACTGGTCAAATCTCAGGGTCTTCTTCCCTATCACCACAGC AACGGATATCTGCTGGAAGTCATCCTAAAAGCAGCCGACCAAAGAAAAAGGGAATCTGCATGAATGAAGATGCTGATCCAAGTCCTTTATCGTTGTCAAA GAGTGAAAGCTTGAGTGCTCAGGTTGAAGAGAAAGCTCCAGAACCTGATGATATTATTTGGAGAAAGCGTTCTAAAGAAACAAGTGACTCAGAAGCAAAG AAACAAAAGCACTTAAGAAAAGTTGGACTTGGCTCAAAGATTACTAAGAAGATATCTCTATCTTCTGGACATGTCGTATCTGCAAAGAAATCAGTTGTCC TAAGTGAACCTGAGAAAAAGCCTCACCATCAGTCAATTGTGATTGCGGTCAGGAGATTTAATAAGCACAGCTCGTCAGTCCCAACAGACACGAAAAAGAG AAGGTCGTTGGATGGTACATCAGATGAGGATGTTAAGGAAGCATTTAGAGATAAGAAGGTTAAATCATTACACGGGGAAGGAAGTTACCTGGAAGAAACC CCGAAAACAAAACTCAAGAGGAAGCGTACTCCGAGGAAGGAAGTGTCTTCTGAAACTCCTGATCTCAGTGAGCAATTGGTTGGTAGCAAAATAAAGGTTT GGTGGCCAATGGATAAGAGGTTCTATGAAGGAGTTGTTGATTCCTATGACCCCATCAAAAAGAAGCACAGGGTCTTGTATGCTGATGGGGATGAAGAGAA GCTTAATCTCAAAAGGCAGCGGTGGGAACTAATTAAAGATGATAGTTTTCCAGTTCAAGAGCAGGAGATTGATGTTCCAAAAGCTGCTACTTCATCTGAC GTACTGCAAAAGGCCAAATGCGAGACTAAGTCAGAGTCAAGGAAGAGATCAAAGGCTGTTTCATCCTCGAAAAGGAGCAGAGCTGCCAACATTTCCAAAA CTAGAGCTAGAAGATCTGCATATGGTGCTGTGCCTAACGAACCAATTATTGTCAACAAACCTGCGGATCATGACACATCTGGGTCAGATAGTGGTTCAGA AGATGATGGGAAAAACACACCAGGGCAAGATAGCGGTTCAGAAGATGATGGTGAAAATTCTACTGTCAAGTTGAAGATCGACAATCCATTGACTGATATC AAGTCCAAGCAAGCAATGCCAGAGACTGTAAATACATCTGACAATGGAAGTCCCAAAGCTGGTACCGAGTATTGTAGCTTCAACTCTGAGCAGACAACTT CAGTCGGTGTGACACCATCCAAAGATGAAAGTTCCAAAGGGGATGATGAATCTCACGGCTCGGATGGATCTAATAGGGAACAACAAGGGGAAGTGAGCTC TTCCTTTTCACCTGAAACTGAGTAG
AA sequence Show only first row Show all	>Potri.001G046500.3 pacid=42791406 polypeptide=Potri.001G046500.3.p locus=Potri.001G046500 ID=Potri.001G046500.3.v4.1 annot-version=v4.1 MPYSETELQERLKEAGKSLLNPPSSVNELLDLLDKLERFLANVEQAPPRSMQDALLPTMKALISSALLRHSDEDVRFAVASCTSEITRITAPDAPYNDDQ MKEIFQLTVASFEKLSQTSGHCYTKAVSILENVARVRSCLVMLDLELDELIIEMFQHFLKFIRSNHPKTVILAMETIMTLVIDESEEISAELLTLLLASV KKQNQSVSPMAWELGERVITNSAAKLKPYLKEAVQSTGILLDEYAPIVASIFQDDSCTLEGDYSNRSGEHLGLSPNAACQGEIFEGKDVIPKSKASKGTA STRNARTVKKDNASKMLDPCSLTEHSKSTDAQDKAEPKVRLEKEPKTVPSKRGWKPNSLMNPEEGYDPWFNTGRKTTKLPREKRHDKGTDVLPSETPVSK KVALSLKHLSVTKPTGFTPKTGQISGSSSLSPQQRISAGSHPKSSRPKKKGICMNEDADPSPLSLSKSESLSAQVEEKAPEPDDIIWRKRSKETSDSEAK KQKHLRKVGLGSKITKKISLSSGHVVSAKKSVVLSEPEKKPHHQSIVIAVRRFNKHSSSVPTDTKKRRSLDGTSDEDVKEAFRDKKVKSLHGEGSYLEET PKTKLKRKRTPRKEVSSETPDLSEQLVGSKIKVWWPMDKRFYEGVVDSYDPIKKKHRVLYADGDEEKLNLKRQRWELIKDDSFPVQEQEIDVPKAATSSD VLQKAKCETKSESRKRSKAVSSSKRSRAANISKTRARRSAYGAVPNEPIIVNKPADHDTSGSDSGSEDDGKNTPGQDSGSEDDGENSTVKLKIDNPLTDI KSKQAMPETVNTSDNGSPKAGTEYCSFNSEQTTSVGVTPSKDESSKGDDESHGSDGSNREQQGEVSSSFSPETE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31880			unknown protein		Potri.001G046500 [exp]	0	1
AT2G14680		MEE13	maternal effect embryo arrest ...		Potri.009G087100 [exp]	10.77	0.7930
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Potri.001G469701 [exp]	13.11	0.7000
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.016G046200 [exp]	15.49	0.7929	FAD2.3
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177600 [exp]	18.65	0.8074
					Potri.003G038525 [exp]	22.44	0.7917
AT5G25820			Exostosin family protein (.1)		Potri.006G239000 [exp]	22.44	0.7545
AT1G55550			P-loop containing nucleoside t...		Potri.001G000800 [exp]	23.36	0.7252
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.010G237800 [exp]	34.98	0.7600
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.018G099500 [exp]	37.33	0.7347
AT5G04700			Ankyrin repeat family protein ...		Potri.002G048666 [exp]	43.43	0.7313

Compare expression of checked genes

Potri.001G046500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.