Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GOS11.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15880 369 / 2e-131 ATGOS11, GOS11 golgi snare 11 (.1) AT2G45200 138 / 2e-40 ATGOS12, GOS12 golgi snare 12 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G180800 [exp] 433 / 1e-156 AT1G15880 365 / 4e-130 golgi snare 11 (.1) Potri.002G145200 [exp] 132 / 4e-38 AT2G45200 365 / 3e-129 golgi snare 12 (.1.2) Potri.014G066800 [exp] 132 / 5e-38 AT2G45200 372 / 3e-132 golgi snare 12 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026058 [exp] 302 / 2e-105 AT1G15880 288 / 4e-100 golgi snare 11 (.1) Lus10014349 [exp] 223 / 5e-75 AT1G15880 214 / 7e-72 golgi snare 11 (.1) Lus10001986 [exp] 142 / 9e-42 AT2G45200 437 / 5e-158 golgi snare 12 (.1.2) Lus10009285 [exp] 140 / 5e-41 AT2G45200 444 / 2e-160 golgi snare 12 (.1.2) Lus10030294 [exp] 85 / 1e-19 AT2G45200 297 / 2e-102 golgi snare 12 (.1.2) Lus10015880 [exp] 0 / 1 AT2G45200 151 / 3e-47 golgi snare 12 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [poplar] [flax] Traffic PF12352 [poplar] [flax] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus
Representative CDS sequence Show only first row Show all	>Potri.001G047100.1 pacid=42789436 polypeptide=Potri.001G047100.1.p locus=Potri.001G047100 ID=Potri.001G047100.1.v4.1 annot-version=v4.1 ATGGAAGTGACTACTACTTCTTCATGGGACGCTTTACGCAAACAGGCGAGGAAACTCGAAGCTCAGTTAGATGAGCAGATGAACTCATATCGTAAACTGG CATCCTCAAAGGGTTCTACAAAAGTTGATTCTGCAGAGAATGATCCTGAATCTGGGATAGACCGACTATTAAAACAGCTCCAACAAGTAAATTCACAGAT GCAAGCATGGGTATCATCTGGAGGATCAGAAATGGTTTCTCACACCTTGACTCGGCATCAGGAAATTCTTCAAGATCTTACTCAGGAGTTTCATCGCCTC CGTTCTGGCATGAGGGCTAAGCAAGAACATGCTCTGCTTCTGGAGGATTTTAGAGAGTTTGATCGAACAAGATTAGATTTGGAAGACGGTGTTGGTTCTG CAGACCAAGCTCTCCTTAGAGAGCATGCATCCATTAGCCGAAATACCGGTCAGATGGATAATGTGATTTCACAAGCTCAAGCAACTCTTGGTTCTCTTGT TCTTCAACGTTCAACTTTTGGAGGAATTAATTCAAAGCTGAGTAATGTTAGCAGCCGCCTCCCAACGGTAAATCAAATTCTGTCAGCAATAAAGAGGAGA AAGTCTATGGATTCCATCATACTTTCCCTGGTTGCTTCCGTATGCACTTTTCTTATTTTTATTTACTGGGTGACCAAGTAA
AA sequence Show only first row Show all	>Potri.001G047100.1 pacid=42789436 polypeptide=Potri.001G047100.1.p locus=Potri.001G047100 ID=Potri.001G047100.1.v4.1 annot-version=v4.1 MEVTTTSSWDALRKQARKLEAQLDEQMNSYRKLASSKGSTKVDSAENDPESGIDRLLKQLQQVNSQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFHRL RSGMRAKQEHALLLEDFREFDRTRLDLEDGVGSADQALLREHASISRNTGQMDNVISQAQATLGSLVLQRSTFGGINSKLSNVSSRLPTVNQILSAIKRR KSMDSIILSLVASVCTFLIFIYWVTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Potri.001G047100 [exp]	0	1	GOS11.1
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Potri.010G001900 [exp]	7.81	0.8849	NPSN12.1
AT5G37310			Endomembrane protein 70 protei...		Potri.004G075450 [exp]	10.77	0.9211
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Potri.013G155300 [exp]	14.28	0.9171
AT3G24040			Core-2/I-branching beta-1,6-N-...		Potri.001G053800 [exp]	14.83	0.8914
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.010G207200 [exp]	14.89	0.9193	UXS1.1
AT4G38040			Exostosin family protein (.1)		Potri.007G058400 [exp]	16.61	0.8695
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.006G129200 [exp]	17.02	0.9160	Pt-FLA11.1
AT3G06035			Glycoprotein membrane precurso...		Potri.010G033400 [exp]	23.40	0.9166
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Potri.018G072400 [exp]	24.91	0.9020
AT2G28315			Nucleotide/sugar transporter f...		Potri.004G211900 [exp]	25.78	0.9139

Compare expression of checked genes

Potri.001G047100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.