Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76280 563 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT2G31400 92 / 7e-19 GUN1 genomes uncoupled 1 (.1) AT1G63130 76 / 6e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18940 75 / 1e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63150 75 / 2e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 74 / 5e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04760 72 / 1e-12 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G02860 72 / 1e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 71 / 1e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 72 / 2e-12 PGR3 proton gradient regulation 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G193900 [exp] 90 / 4e-18 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.009G069600 [exp] 89 / 8e-18 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G118500 [exp] 88 / 1e-17 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.006G264800 [exp] 84 / 3e-16 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.010G217600 [exp] 83 / 6e-16 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G006500 [exp] 81 / 1e-15 AT5G46680 444 / 1e-153 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G105700 [exp] 79 / 1e-14 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G013300 [exp] 78 / 2e-14 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 77 / 3e-14 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001597 [exp] 400 / 3e-128 AT1G76280 507 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10022290 [exp] 83 / 6e-16 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10013894 [exp] 81 / 2e-15 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003657 [exp] 80 / 4e-15 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10002107 [exp] 80 / 6e-15 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015530 [exp] 74 / 3e-13 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043417 [exp] 74 / 3e-13 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 74 / 3e-13 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 74 / 5e-13 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10005303 [exp] 74 / 5e-13 AT1G30290 1037 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G047200.3 pacid=42789139 polypeptide=Potri.001G047200.3.p locus=Potri.001G047200 ID=Potri.001G047200.3.v4.1 annot-version=v4.1 ATGCTAGTTTGCCAAAGAATGCATAGACCTCTAGGGAGAGTTTCTTTTTGCTCAATAGCAGAAAAATTTAAATCTCACAAACAAGGACAAAGAAATGTCA CTGATGAATTTTGGTTCTCTCAGAATTTCACCGCTTTAATTGGTAATAATGTTTCAAAGCATTGTCCAGAATCAACTACAGATTCAATTCTGAAGCAAAT TGTTAGTGCACTTCACATGGGCGAGAGAAGCAGAGCATCTGCTCTGCTTTTAGAACTTGGCCAAGAAAAAAAGTCATTAAAGCCTCGCAATTTTGTTCCT ATACTTCAATATTGTGCTAGATCACCTGATCCATTGCTTGTCTTGGAGACTTGGCAAATAATGGAGGAAAAAGAGGTCGGCCTGGATAGCAAATGTTACC TGCTTATGATCCGAGCACTTTGTAAAGGAGGTTACTTGGAGGAGGCATCTAATATGATTGATTTTATTGGAGAAAGCCATGGTATCTATCCTACCCTGCC GGTGTATAACACTTTCTTGGGAGCATGCTCAGATATGAGCAGGGCAGATTATGCCGATCAATGTTTGCAATTGATGGAGCGCAGAATGATGGGGAAGGAT GAAGTTACTTACATAATGCTTCTCAAGCTGGCAGTTTCCCAACAGAACCTCTCTGCAGTCTATGAAATCTGGGAAGACTACATCAAACACTTCAGTCCAA GCATTCTTACCTTGCAAAAGTTTATTTGGTCCTTTACAAGGCTAAGAGATTTAAAGTCTGCATATGAAAAATTGCAACATATGGTGGTTTTAGCCATCCG AGGAAATACTTTTGTACAGACCTCTTCTAGAGGACAGCTCTATCCATCAAGAGTGAACGTTCCTATACATCCAAACTGTGAATTAGGCTTGCAGAAATTT GATTTAAAGGATAATGAACAGTCTGTTCCCTTATCAGCAAATGCTTCTGCTTGTAACATACAAGAATGTGATAATGAACAGTCTGTTCCTTCAACAGCAA ATGCTTCTGCTTGTAACGTACAAGAGTGCGATAATGAACAGTCTGTTCCTTTGACAGCAAATGCTCCTGCTTGTAACATACAAGAGTGTGTTACTTCGGA CATGGGAAATAAAGAAGTTGAAAGTGCTGGACAAGTTGGACTGGATAAACGTAAAATCATGCCTTTTTCCAGGATCCTGAGGTGGTCTTTCAATGATGTG ATACATGCATGTGCGCAAGCTAAAAAACCTGGATTAGCAAAGCAGTTAATGTTACAGATGGAAAATATTGGCTTGCTACCTTCAAGCCATACGTATAATG GATTTGCTAGAGCTGTTTCTAAGAGACATTTCAGGAAAGGCATGGAAGTGTTAAAAACAATGCAACAGAAGAATTTGAAGCCATGTGATCCAACGCTTGC AACCATTTCAGTGGCATGTAGCAAAGCTTTGGAACTGGATTTGGCAGAGGTTCTGTTGGATCAAATTACCAACTGTCCATATCCATATCCTTATAATTCA TTTCTTGAAGCTTGCGATGCAATGGATCAACCTGAGCGTGCTGTGCGGATGTTGGCTAAAATGAAAAAATTAAAGATTCAGCCAGATATCAGGACATATC AGCAACTGTTTTCATTAGTTGGCAATACAAATGCTCCATATGAGGATGGTGATATGTTGTCACGTGTAGACTCTGCTAAACGGATAAAGGCTATAGAGAA GGATATGGCGAAAAATGGTGTCCAGCATAGTCGGGAATCAATGAAGAACTTGTTGAAAGCTCTTGGAAAAGAAGGGATGATGAGAGAGCTAATGCAATAT TTAGGTGTGGCAGAAGATCTTTTCTATCATAGTAACACGCATCTGGGAATACCTATTTATAACACAGTGCTGCATTCACTCGTTGAGGCTGAGGAATGTC GAATGGCAATTGCACTTTTCAAACATATGAAAGCAAGTGGTTTCGAGCCAAATGCTGCAACTTACTGTATAATGATTGATTGTTGTCGCACTATAAGATG TTATAAATCTGCCTGTGCATTGGTTTCCATGATGTTGCGTTCTGGGTTTTATCTACAGACGGTGGGGTACACTGCTCTCATAAAGATTTTGTTGCAAGAT GAAAATTTTGATGAAGCGTTGAATCTTTTGGATCAAGGGCACTCTGAAGAGATTAAACTTGATGTACTGTTATATAATCCTGTTCTTCATGTAGCAAAAG ATAAGGGAAGGATCGATATCATAGAGCTTATTGTTGAGCAGATGCACCGGGAGAAAATCCAGCCTGATACTACAACCTGCAACAATGTGTTCACCGCCTA TGTGTATTGTGGTTTTCATAATATGGCCATGGAAGCATTGCAAGTTCTGAGCATGCGGATGATTAGCCAAGAAGACTGTGTTCTGGAAGAAAAGAAGGCA GAACTTGAGGATTTGATCCTTTCTGAAGACAAGGAAGCCGAGTCACGAATACTTGAGCATTTTAAAGATTTTGAGGAGAATATTGCTGTTGCCCTTTTGA ATTTAAGAAATTGTGCCATTCTTGGGTTTCCAATTTCTTGGTCACCAAATAAGAGCGCGTGGGCAAGAAGACTTTCAGCTAACTATGATAGCAGAAAGAA AGTCCACTGA
AA sequence Show only first row Show all	>Potri.001G047200.3 pacid=42789139 polypeptide=Potri.001G047200.3.p locus=Potri.001G047200 ID=Potri.001G047200.3.v4.1 annot-version=v4.1 MLVCQRMHRPLGRVSFCSIAEKFKSHKQGQRNVTDEFWFSQNFTALIGNNVSKHCPESTTDSILKQIVSALHMGERSRASALLLELGQEKKSLKPRNFVP ILQYCARSPDPLLVLETWQIMEEKEVGLDSKCYLLMIRALCKGGYLEEASNMIDFIGESHGIYPTLPVYNTFLGACSDMSRADYADQCLQLMERRMMGKD EVTYIMLLKLAVSQQNLSAVYEIWEDYIKHFSPSILTLQKFIWSFTRLRDLKSAYEKLQHMVVLAIRGNTFVQTSSRGQLYPSRVNVPIHPNCELGLQKF DLKDNEQSVPLSANASACNIQECDNEQSVPSTANASACNVQECDNEQSVPLTANAPACNIQECVTSDMGNKEVESAGQVGLDKRKIMPFSRILRWSFNDV IHACAQAKKPGLAKQLMLQMENIGLLPSSHTYNGFARAVSKRHFRKGMEVLKTMQQKNLKPCDPTLATISVACSKALELDLAEVLLDQITNCPYPYPYNS FLEACDAMDQPERAVRMLAKMKKLKIQPDIRTYQQLFSLVGNTNAPYEDGDMLSRVDSAKRIKAIEKDMAKNGVQHSRESMKNLLKALGKEGMMRELMQY LGVAEDLFYHSNTHLGIPIYNTVLHSLVEAEECRMAIALFKHMKASGFEPNAATYCIMIDCCRTIRCYKSACALVSMMLRSGFYLQTVGYTALIKILLQD ENFDEALNLLDQGHSEEIKLDVLLYNPVLHVAKDKGRIDIIELIVEQMHREKIQPDTTTCNNVFTAYVYCGFHNMAMEALQVLSMRMISQEDCVLEEKKA ELEDLILSEDKEAESRILEHFKDFEENIAVALLNLRNCAILGFPISWSPNKSAWARRLSANYDSRKKVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76280			Tetratricopeptide repeat (TPR)...		Potri.001G047200 [exp]	0	1
AT3G63340			Protein phosphatase 2C family ...		Potri.005G214650 [exp]	1.41	0.8601
AT4G14096			F-box/RNI-like superfamily pro...		Potri.013G151700 [exp]	1.73	0.7854
AT3G08960			ARM repeat superfamily protein...		Potri.016G119900 [exp]	6.48	0.7424
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Potri.002G096400 [exp]	7.93	0.7362
AT1G51540			Galactose oxidase/kelch repeat...		Potri.010G252100 [exp]	8.94	0.6836
AT3G44370			Membrane insertion protein, Ox...		Potri.009G121800 [exp]	8.94	0.7454
AT5G52545			unknown protein		Potri.004G079400 [exp]	14.69	0.7698
AT5G16890			Exostosin family protein (.1)		Potri.019G049800 [exp]	14.86	0.6860
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.016G095750 [exp]	15.29	0.7100
AT5G10630			Translation elongation factor ...		Potri.006G275500 [exp]	16.00	0.7179

Compare expression of checked genes

Potri.001G047200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.