Plant FIBer expression Database

Potri.001G047400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80750 285 / 2e-97 Ribosomal protein L30/L7 family protein (.1)
AT3G13580 246 / 3e-82 Ribosomal protein L30/L7 family protein (.1.2.3)
AT2G01250 244 / 1e-81 Ribosomal protein L30/L7 family protein (.1.2)
AT2G44120 239 / 1e-79 Ribosomal protein L30/L7 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G180700
[exp]
449 / 2e-162 AT1G80750 280 / 1e-95 Ribosomal protein L30/L7 family protein (.1)
Potri.008G008000
[exp]
245 / 6e-82 AT3G13580 410 / 7e-147 Ribosomal protein L30/L7 family protein (.1.2.3)
Potri.010G250900
[exp]
243 / 5e-81 AT3G13580 414 / 2e-148 Ribosomal protein L30/L7 family protein (.1.2.3)
Potri.006G073200
[exp]
240 / 5e-80 AT2G44120 363 / 2e-128 Ribosomal protein L30/L7 family protein (.1.2)
Potri.018G140300
[exp]
234 / 1e-77 AT3G13580 359 / 8e-127 Ribosomal protein L30/L7 family protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040040
[exp]
373 / 5e-132 AT1G80750 269 / 4e-91 Ribosomal protein L30/L7 family protein (.1)
Lus10019603
[exp]
372 / 7e-132 AT1G80750 269 / 5e-91 Ribosomal protein L30/L7 family protein (.1)
Lus10021296
[exp]
239 / 2e-79 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3)
Lus10016970
[exp]
239 / 2e-79 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3)
Lus10004220
[exp]
238 / 5e-79 AT2G44120 421 / 4e-151 Ribosomal protein L30/L7 family protein (.1.2)
Lus10029423
[exp]
236 / 3e-78 AT2G44120 420 / 6e-151 Ribosomal protein L30/L7 family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
PF08079 Ribosomal_L30_N Ribosomal L30 N-terminal domain
Representative CDS sequence
>Potri.001G047400.1 pacid=42788302 polypeptide=Potri.001G047400.1.p locus=Potri.001G047400 ID=Potri.001G047400.1.v4.1 annot-version=v4.1
ATGGCAGAAGCGGAGCCGCAGGCATTGACGTATGTACCGGAGGTGATATTGAAGAAAAGGAAGCATAAGGAAGAATCAATTGCTCTTACGAGGAAAACCC
AGTTGGAGTTGGGGCAAAATGGAGGGAAGAAGAGGAGAATGGACGATATCAAAAGGCCCGAACAGTTTGTCAGGGAGTTTAGGGACAAGGAATTGGATCT
CATCCGTATGAAACAGAGGACCAAGAGAGCAAAATCAGCATTATCTATACCAAATTCGAAGCTCCTATTTGTCATTCGCGTACATGGAAAAAATGACATG
CATCCAAAAACTAGGAACATCTTATACAAACTGAGATTGACAAGAATCTTTCACGGTGTCTTCTTGAAGGCAACCCAAGGGGTATTAGAATTGCTGCAAA
AGGTGGAGCCATATGTTACATACGGATATCCAAATTTGAAGAATGTGAGTGATCTGATTTACAAGAAGGGCTATGGAAAGATAGACAACAAAAGAGTTCC
TTTAATTGATAATAATATTATTGAACAGGCATTAGGGAAGCATGGCATTGTATGTCTAGAAGATATTGTACATGAAGTTGCCAATGCTGGTCCACATTTC
AAGGAGATCATTAGTTTTTTGGGGTCATTTTCACTCAACAAGCCGAAAGAAGGATTGCTGGGGAAGAAGGCATTATACATAGATGGGGGAGACACTGGGA
ATCGTGAGAATCAGATTAATGACTTAATCAATAAGATGAACTAA
AA sequence
>Potri.001G047400.1 pacid=42788302 polypeptide=Potri.001G047400.1.p locus=Potri.001G047400 ID=Potri.001G047400.1.v4.1 annot-version=v4.1
MAEAEPQALTYVPEVILKKRKHKEESIALTRKTQLELGQNGGKKRRMDDIKRPEQFVREFRDKELDLIRMKQRTKRAKSALSIPNSKLLFVIRVHGKNDM
HPKTRNILYKLRLTRIFHGVFLKATQGVLELLQKVEPYVTYGYPNLKNVSDLIYKKGYGKIDNKRVPLIDNNIIEQALGKHGIVCLEDIVHEVANAGPHF
KEIISFLGSFSLNKPKEGLLGKKALYIDGGDTGNRENQINDLINKMN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G80750 Ribosomal protein L30/L7 famil... Potri.001G047400
[exp]
0 1
AT1G80750 Ribosomal protein L30/L7 famil... Potri.003G180700
[exp]
1.00 0.8889
AT1G30880 unknown protein Potri.003G155400
[exp]
1.41 0.8825
AT3G16310 mitotic phosphoprotein N' end ... Potri.001G188300
[exp]
3.16 0.8498
AT5G02820 BIN5, RHL2 ROOT HAIRLESS 2, BRASSINOSTERO... Potri.006G132600
[exp]
5.29 0.8549 Pt-RHL2.1
AT4G25200 ATHSP23.6-MITO mitochondrion-localized small ... Potri.003G075900
[exp]
6.00 0.8515
AT3G58660 Ribosomal protein L1p/L10e fam... Potri.012G145000
[exp]
6.24 0.8424
AT5G16930 AAA-type ATPase family protein... Potri.011G143300
[exp]
6.32 0.8667
AT5G62050 ATOXA1, OXA1AT,... HOMOLOG OF YEAST OXIDASE ASSEM... Potri.018G140100
[exp]
6.63 0.8714
AT2G37990 ribosome biogenesis regulatory... Potri.005G231000
[exp]
6.70 0.8314
AT1G07030 Mitochondrial substrate carrie... Potri.001G282400
[exp]
7.41 0.8477

Potri.001G047400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.