Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80670 583 / 0 RAE1 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) AT3G19590 187 / 2e-56 BUB3.1 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G15850 180 / 2e-56 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49910 181 / 3e-54 BUB3.2 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.2, Transducin/WD40 repeat-like superfamily protein (.1) AT1G69400 103 / 3e-25 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 68 / 3e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 66 / 1e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 62 / 2e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G48630 61 / 2e-10 RACK1B_AT receptor for activated C kinase 1B (.1) AT3G18130 61 / 3e-10 RACK1C_AT receptor for activated C kinase 1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G180000 [exp] 664 / 0 AT1G80670 590 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G295100 [exp] 185 / 1e-55 AT3G19590 593 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G089200 [exp] 174 / 1e-51 AT3G19590 602 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G162700 [exp] 97 / 9e-23 AT1G69400 350 / 7e-121 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G092100 [exp] 90 / 3e-20 AT1G69400 333 / 2e-114 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 67 / 8e-12 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 64 / 7e-11 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 62 / 9e-11 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 62 / 2e-10 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026095 [exp] 597 / 0 AT1G80670 632 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002323 [exp] 575 / 0 AT1G80670 608 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003954 [exp] 181 / 6e-54 AT3G19590 618 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023814 [exp] 171 / 3e-50 AT3G19590 610 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10026051 [exp] 80 / 1e-16 AT1G69400 318 / 9e-109 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014343 [exp] 77 / 1e-15 AT1G69400 313 / 6e-106 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10018458 [exp] 62 / 3e-10 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 62 / 3e-10 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 61 / 8e-10 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 61 / 1e-09 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.001G048100.3 pacid=42790892 polypeptide=Potri.001G048100.3.p locus=Potri.001G048100 ID=Potri.001G048100.3.v4.1 annot-version=v4.1 ATGTCTGCTTTTGGCTCTGCCGGTACGGCTAATACAAACCCTAATAAATCCATTGAGGTGTTACAGCCTCCTAGCGACTCGGTTTCGAGTCTCTCTTTCA GTCCGAAAGCCAACTTCTTAGTCGCAACTTCTTGGGACAATCAGGTACGATGCTGGGAAATTACAAGGAATGGGACCACTGTAGGCAGTGTTCCCAAGGC TTCAATATCACATGACCAACCGGTGTTGTGCTCAAGTTGGAAGGATGATGGAACAACTGTCTTTTCTGGAGGGTGCGACAAACAGGTTAAGATGTGGCCT TTGCTCTCTGGTGGTCAACCAGTAACTATTGCGATGCATGATGCCCCTATCAAAGAGATTACATGGATTCCCGAGATGAACTGCTTAGCCACGGCAAGTT TCGACAAAACCTTGAAGTACTGGGATTTAAGGCAGTCAACTCCAGTACACACTCAGCAACTTGGTGAGCGCTGTTATGCAATGACAGTGCGGTATCCTTT GATGGTCGTTGGCACTGCAGACAGAAACATGGTAGTCTATAACCTGCAAAATCCTCAGACTGAATTTAAGAAAATCCCTTCACCCTTGAAGTATCAGACA AGATGTATAGCTGCCTTTCCTGATCAACAAGGCTTCTTGGTCGGTTCAATAGAGGGAAGGGTTGGTGTACATCATCTGGATGAAGCTCAACAAAGTAAAA ACTTCACCTTCAAATGCCACAGAGATAACAATGAGATTTACTCAGTCAACTCCTTGAACTTCCATCCAGTGCATCACACGTTTGCAACTGCTGGATCTGA TGGTGCTTTTAATTTTTGGGACAAGGATAGCAAACAGAGACTCAAGGCGATGTCACGGTGCCCTCTACCAATACCCTGCAGTACATTCAATAATGATGGC TCGATTTTTGCGCATGCGGTGTGCTATGATTGGGGCAAGGGTGCTGAAAATCACAACCCAGCAACAGCGAAGACCTATATTTATCTGCATTTACCTCAGG AAACCGAAGTGAAAGGAAAGCCAAGGGTTGGAGGAACTACTAGAAGGTGA
AA sequence Show only first row Show all	>Potri.001G048100.3 pacid=42790892 polypeptide=Potri.001G048100.3.p locus=Potri.001G048100 ID=Potri.001G048100.3.v4.1 annot-version=v4.1 MSAFGSAGTANTNPNKSIEVLQPPSDSVSSLSFSPKANFLVATSWDNQVRCWEITRNGTTVGSVPKASISHDQPVLCSSWKDDGTTVFSGGCDKQVKMWP LLSGGQPVTIAMHDAPIKEITWIPEMNCLATASFDKTLKYWDLRQSTPVHTQQLGERCYAMTVRYPLMVVGTADRNMVVYNLQNPQTEFKKIPSPLKYQT RCIAAFPDQQGFLVGSIEGRVGVHHLDEAQQSKNFTFKCHRDNNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCPLPIPCSTFNNDG SIFAHAVCYDWGKGAENHNPATAKTYIYLHLPQETEVKGKPRVGGTTRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80670		RAE1	RNA export factor 1, Transduci...		Potri.001G048100 [exp]	0	1
AT2G42120		POLD2	DNA polymerase delta small sub...		Potri.016G045800 [exp]	1.73	0.8430
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Potri.008G119500 [exp]	5.00	0.8216
AT4G40042			Microsomal signal peptidase 12...		Potri.010G059300 [exp]	6.63	0.7531
AT2G41600			Mitochondrial glycoprotein fam...		Potri.006G046350 [exp]	7.14	0.7818
AT2G40600			appr-1-p processing enzyme fam...		Potri.013G092700 [exp]	8.06	0.7910
AT1G79220			Mitochondrial transcription te...		Potri.007G069100 [exp]	8.71	0.8411
AT2G24390			AIG2-like (avirulence induced ...		Potri.006G278900 [exp]	8.71	0.8387
AT4G17760			damaged DNA binding;exodeoxyri...		Potri.001G139100 [exp]	9.00	0.8393
AT5G37530			NAD(P)-binding Rossmann-fold s...		Potri.004G083200 [exp]	10.48	0.7982
AT5G48660			B-cell receptor-associated pro...		Potri.014G191500 [exp]	11.66	0.8063

Compare expression of checked genes

Potri.001G048100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.