Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HA1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07560 1191 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT3G42640 1189 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT1G80660 1188 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT4G30190 1185 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 1183 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT5G57350 1165 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT5G62670 1134 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT2G24520 1132 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT3G47950 1125 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT3G60330 1051 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G179800 [exp] 1248 / 0 AT1G80660 1463 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Potri.018G006000 [exp] 1208 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G188600 [exp] 1201 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G005900 [exp] 1201 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G090300 [exp] 1197 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G165900 [exp] 1197 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.006G275000 [exp] 1193 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G112400 [exp] 1182 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.012G071600 [exp] 1135 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024105 [exp] 1220 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026946 [exp] 1182 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10001631 [exp] 1181 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10019593 [exp] 1142 / 0 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Lus10003259 [exp] 1127 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 1127 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10028201 [exp] 1083 / 0 AT3G60330 1422 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 1066 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10040166 [exp] 1066 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10026224 [exp] 1042 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G048300.2 pacid=42788557 polypeptide=Potri.001G048300.2.p locus=Potri.001G048300 ID=Potri.001G048300.2.v4.1 annot-version=v4.1 ATGGCTGACGAAGGCTACGACGACATCGCTGCTGCCACCACCGCCGACGGCATGGTGCTTAGCTTGCAGGAAATCAAAAACGAGAACGTCGACCTTGACC GTATTCCAGTTTCGGAAGTATTTCAACAATTGCAATGCACGAAAGAGGGTCTGTCTACCGAGGAAGGCCAGAAGAGGCTTCAAATTTTCGGTCCAAACAA GCTAGAAGAGAAAAAGGAGAGCAAGCTTTTGAAATTCTTGGGTTTTATGTGGAACCCACTCTCATGGGTCATGGAGGGTGCTGCTATCGTGGCCATTGTC TTGGCAAACGGAGAGGGCAAGCCACCAGACTGGCAAGACTTTTTGGGTATTGTGGTATTGCTTCTCATGAACTCAACTATAAGTTTTTATGAAGAAAATA GTGCAGGCAATGCTGCGGCTGCTCTTATGGCAGGTCTTGCCCTGAAGACCAAGGTTTTGAGAGATGGAAGGTGGATTGAGCAAGAGGCTGCTGTCTTGGT CCCAGGAGATGTGATCAGTATCAAGCTGGGAGACATTATACCAGCAGATGCTCGTCTACTGGAGGGTGACCCGCTTAAGATTGATCAGTCTGCTCTCACT GGTGAGTCTTTGCCAGTTACAAAGAAGCCAGGCGATGAAGTATTCTCTGGGTCTACCTGCAAGCATGGTGAGATTGAAGCTGTTGTGATTGCCACTGGGG TGCACTCCTTTTTTGGCAAAGCTGCTCATCTCGTAGATAGCACCAATAAAGTGGGGCATTTCCAAAAGGTGTTGATATCCATTGGAAACTTTTGCATAAT CTCCATTGTAGTGGGAATAATCATTGAGGCACTTGTAATGTGGCCTATTCAGAGGCGCAAGTACCGGGATGGTATTGACAATATTTTGGTGCTTCTCATT GGAGGGATCCCAATTGCCATGCCAACCGTGTTGTCAGTGACAATGGCAATTGGATCCCACTGGCTTTCGCAGCAAGGAGCTATCACTAAGCGGATGACGG CTATCGAAGAAATGGCTGGAATGGATGTATTATGCAGTGACAAGACCGGTACCCTCACTCTTAACATACTTACAGTAGACAAGAGCTTGGTTGAGGTATT TGTTAACGATGTTGACAAGGACACGTTAATTTTGCTAGGGGCTAGGGCCTCCAGGGTTGAGAATCAGGATGCTATTGATGCATGTATTGTTGGGATGTTG GCAGATCCCGAGGAGGCCAGAGAAAGCATCACTGAGGTGCATTTCTTGCCATTTAATCCAGTGGAGAAGCGTACAGCTATAACGTATATCGACTCTGATG GCAATTGGCACCGAGTTAGCAAAGGCGCCCCCGAGCAGATCATTGCATTGTGCAACCTCCGGGAAGATGTAGAAAGAAAAGCTAATGTCATCATTGATAA GTTTGCTGAACGAGGCCTCCGCTCTCTAGCTATTTGTAGACAAATTGTTCCGGAGAAAACCAAGGAAAGCCCTGGAGGGCCATGGGAATTTGTGGGCCTG TTGCCTCTCTTTGATCCTCCAAGGCATGACAGTGCAGAGACCATTACTCGTGCCCTCAATCTAGGTGTCAATGTTAAGATGATCACTGGTGATCAGCTAG CAATTGGTAAGGAGACTGGTCGGAGGCTTGGAATGGGAACCAATATGTATCCCTCTTCTGCCCTCCTTGGGCTGCACCCGGATGATTCAACTGCAGCCCT TCCTGTTGACGAGCTTATCGAAAAGGCTGATGGCTTTGCTGGCGTCTTCCCTGAGCACAAGTTCGAGATTGTAAGGAGGCTGCAAGCTAGGAAGCATATT TGCGGGATGACTGGAGATGGTGTAAATGATGCGCCAGCATTGAAGAAAGCAGACATCGGAATTGCAGTGGCCGATGCTACTGATGCAGCCCGCGGTGCAT CTGACATAGTCCTGACAGAGCCAGGATTGAGTGTGATTGTGAGTGCTGTGTTAACAAGCAGAGCCATTTTCCAGAGAATGAAGAACTACACCATCTATGC AGTATCTATAACCATCCGTATTGTGCTGGGTTTTCTGCTCCTTGCTCTAATTTGGAAATTTGATTTTTCCCCGTTCATGATTCTGATCATTGCGATACTC AACGATGGAACAATCATGACTATCTCCAAAGACAGAGTGAAACCATCTCCAATTCCTGATTCCTGGAAACTTAAGGAGATATTTGCTACTGGTGTCATTC TAGGCACCTACTTAGCTCTAATGACTGTTTTATTCTTCTGGGTTGCTCACAGTTCCGACTTCTTTTCTGATAAATTTGGTGTTAGGTCCATCAGGAACAA CCGTGATGAGCTGGCATCAGCTATATACCTGCAATGGAGGTGGGACATTGCTTGTCTCCAAATAGCTAACAATCTCCCACTTGGAGACAAACAATGA
AA sequence Show only first row Show all	>Potri.001G048300.2 pacid=42788557 polypeptide=Potri.001G048300.2.p locus=Potri.001G048300 ID=Potri.001G048300.2.v4.1 annot-version=v4.1 MADEGYDDIAAATTADGMVLSLQEIKNENVDLDRIPVSEVFQQLQCTKEGLSTEEGQKRLQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEGAAIVAIV LANGEGKPPDWQDFLGIVVLLLMNSTISFYEENSAGNAAAALMAGLALKTKVLRDGRWIEQEAAVLVPGDVISIKLGDIIPADARLLEGDPLKIDQSALT GESLPVTKKPGDEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVDSTNKVGHFQKVLISIGNFCIISIVVGIIIEALVMWPIQRRKYRDGIDNILVLLI GGIPIAMPTVLSVTMAIGSHWLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNILTVDKSLVEVFVNDVDKDTLILLGARASRVENQDAIDACIVGML ADPEEARESITEVHFLPFNPVEKRTAITYIDSDGNWHRVSKGAPEQIIALCNLREDVERKANVIIDKFAERGLRSLAICRQIVPEKTKESPGGPWEFVGL LPLFDPPRHDSAETITRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGLHPDDSTAALPVDELIEKADGFAGVFPEHKFEIVRRLQARKHI CGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLLALIWKFDFSPFMILIIAIL NDGTIMTISKDRVKPSPIPDSWKLKEIFATGVILGTYLALMTVLFFWVAHSSDFFSDKFGVRSIRNNRDELASAIYLQWRWDIACLQIANNLPLGDKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Potri.001G048300 [exp]	0	1	Pt-HA1.2
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.016G048000 [exp]	1.00	0.8591
AT1G21340	DOF	AtDof1,2	Dof-type zinc finger DNA-bindi...		Potri.005G188900 [exp]	2.00	0.8176
AT1G04360			RING/U-box superfamily protein...		Potri.008G165900 [exp]	6.00	0.8011
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Potri.001G085100 [exp]	6.32	0.7766
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Potri.015G110400 [exp]	10.95	0.7751
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Potri.016G036700 [exp]	15.87	0.7365
					Potri.011G041124 [exp]	16.30	0.7468
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.009G078400 [exp]	27.92	0.7485	UF3.3
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Potri.001G332300 [exp]	28.26	0.7428
					Potri.018G001700 [exp]	28.84	0.7433

Compare expression of checked genes

Potri.001G048300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.