Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25220 465 / 2e-162 Protein kinase superfamily protein (.1.2) AT4G32000 459 / 4e-160 Protein kinase superfamily protein (.1.2) AT1G80640 452 / 2e-157 Protein kinase superfamily protein (.1.2) AT5G11020 437 / 2e-151 Protein kinase superfamily protein (.1) AT3G58690 270 / 2e-86 Protein kinase superfamily protein (.1) AT3G20530 261 / 3e-83 Protein kinase superfamily protein (.1) AT5G13160 257 / 7e-81 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT1G61860 252 / 1e-79 Protein kinase superfamily protein (.1) AT1G07870 249 / 2e-78 Protein kinase superfamily protein (.1.2) AT3G02810 252 / 1e-77 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G179500 [exp] 620 / 0 AT2G25220 424 / 2e-147 Protein kinase superfamily protein (.1.2) Potri.006G260100 [exp] 455 / 3e-158 AT5G11020 434 / 3e-150 Protein kinase superfamily protein (.1) Potri.018G022300 [exp] 436 / 2e-150 AT2G25220 402 / 1e-137 Protein kinase superfamily protein (.1.2) Potri.014G143100 [exp] 268 / 1e-85 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 264 / 1e-83 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 261 / 3e-83 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 259 / 1e-81 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 255 / 6e-81 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 256 / 7e-80 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026091 [exp] 565 / 0 AT1G80640 435 / 5e-151 Protein kinase superfamily protein (.1.2) Lus10002328 [exp] 550 / 0 AT4G32000 436 / 6e-152 Protein kinase superfamily protein (.1.2) Lus10041026 [exp] 438 / 9e-152 AT4G32000 480 / 4e-169 Protein kinase superfamily protein (.1.2) Lus10001937 [exp] 425 / 2e-146 AT4G32000 468 / 6e-164 Protein kinase superfamily protein (.1.2) Lus10005345 [exp] 368 / 2e-123 AT2G25220 404 / 2e-138 Protein kinase superfamily protein (.1.2) Lus10033606 [exp] 264 / 4e-84 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10029948 [exp] 265 / 4e-83 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10017647 [exp] 261 / 5e-83 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1) Lus10012814 [exp] 259 / 5e-81 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 259 / 7e-81 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G048500.1 pacid=42792130 polypeptide=Potri.001G048500.1.p locus=Potri.001G048500 ID=Potri.001G048500.1.v4.1 annot-version=v4.1 ATGAATGTTCTTGGTCTGTTATTGCTCATGTGGGCATTGTTAAATACATCTTTGTTTTTCTTGCTTGATGCCAGAGGTGAGTCAACTCCTTCCACCATTT CTGCCTCTCCTCTTCCTAAGAAACATAAACCCAAACCCATGTTTCTCTTCTCTTCAAAAATGCAAGCTCAATCTCCAGGAATGCCTTTGGTTCCTGTGGT TGAAGAAGTGCACCACCAAGATTTGAATAAGAAAATCCTGATAGCACTAGTTGTTGCTTCCACTCTCCTTGGTGGAATAGTGTTGTTTTTCTCATGTTTC TGGATCTACAGACTGAAAAAATCTAGGAAATGCAGGGCCAAAAGTAAAGGCGATGATGTAGCTAAAAGGCATTCGCCGAGTCTGATTGGGGATAAATTTA ATCTCTTGAGGATGGCTGGGAAGAAGGGTTCAGTTGCAGTTATGGAATATCAGTTGTTGCAAGCAGCAACAAACAATTTCCGGGAAGATAATGTTCTAGG ACAAGGTGGTCATGGATGTGTCTATAAAGCTCGTTTCAGTGAAAAACTCCTTGCAGCTGTGAAGAGATTTGAAGGTGAAGCACAGGACATTGGAAGAGAA TTTGAGAACGAGCTGAATTGGTTAACGAAAATTCAGCACCAAAACATAATTTCTCTTTTAGGTTACTGCCTTCATGGTGAAACAAGGTTTCTTGTGTATG AAATGATGCAGAATGGGTCTTTGGAAAGTCAATTGCATGGACCAACACATGGATCAGCATTAACATGGCATCTGCGAATGAAAATTGCTGTTGACGTTGC AAGAGGACTAGAGTATCTTCATGAGCATTGCAATCCTCCTGTTGTCCATAGAGATCTAAAGTCATCTAACATTCTTCTGGATTCGAGCTTCAATGCAAAG CTTTCAGACTTTGGCCTTGCTGTAACATCTGGGATCCAAAGCAAGAACATAGAGCTTTCAGGAACTTTAGGTTATGTAGCACCAGAGTACCTTTTGGATG GTAAACTAACTGATAAAAGTGATGTCTATGCTTTTGGAGTTGTCCTTCTGGAACTCCTGATAGGAAGAAAACCAGTGGAACAGATGTCTCCAGATCAATG TCAGTCTATAGTCTCATGGGCCATGCCTCAGTTCACTGACAGATCGAAGCTTCCAAACATTGTGGATCCTGTTATCAAAGACACTATGGATTTAAAACAC TTATACCAGGTAGCTGCGGTGGCAGTATTATGTGTGCAACAAGAACCAAGTTACAGGCCATTGATAACAGATGTCCTTCATTCCCTCATCCCTCTCGTAC CTCTCGAGCTTGGAGGGTCACTAAGAGTTACAGAACCTGTTCCTCTTGCTCTGCCTTCGCACTGA
AA sequence Show only first row Show all	>Potri.001G048500.1 pacid=42792130 polypeptide=Potri.001G048500.1.p locus=Potri.001G048500 ID=Potri.001G048500.1.v4.1 annot-version=v4.1 MNVLGLLLLMWALLNTSLFFLLDARGESTPSTISASPLPKKHKPKPMFLFSSKMQAQSPGMPLVPVVEEVHHQDLNKKILIALVVASTLLGGIVLFFSCF WIYRLKKSRKCRAKSKGDDVAKRHSPSLIGDKFNLLRMAGKKGSVAVMEYQLLQAATNNFREDNVLGQGGHGCVYKARFSEKLLAAVKRFEGEAQDIGRE FENELNWLTKIQHQNIISLLGYCLHGETRFLVYEMMQNGSLESQLHGPTHGSALTWHLRMKIAVDVARGLEYLHEHCNPPVVHRDLKSSNILLDSSFNAK LSDFGLAVTSGIQSKNIELSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLIGRKPVEQMSPDQCQSIVSWAMPQFTDRSKLPNIVDPVIKDTMDLKH LYQVAAVAVLCVQQEPSYRPLITDVLHSLIPLVPLELGGSLRVTEPVPLALPSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25220			Protein kinase superfamily pro...		Potri.001G048500 [exp]	0	1
AT1G53860			Remorin family protein (.1)		Potri.001G163000 [exp]	2.23	0.8706
AT1G45207			Remorin family protein (.2)		Potri.002G125200 [exp]	3.16	0.8911
AT3G13560			O-Glycosyl hydrolases family 1...		Potri.001G006500 [exp]	6.00	0.8836
AT1G47740			PPPDE putative thiol peptidase...		Potri.009G113168 [exp]	6.92	0.8688
AT2G23530			Zinc-finger domain of monoamin...		Potri.007G036200 [exp]	6.92	0.8857
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.019G103900 [exp]	9.79	0.8416
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G012200 [exp]	10.58	0.8762	Pt-CALS1.3
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Potri.018G066300 [exp]	10.86	0.8062	SMH903
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.001G200400 [exp]	17.66	0.8245	BGAL1.1
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.010G055900 [exp]	18.52	0.8676

Compare expression of checked genes

Potri.001G048500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.