Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15520 1848 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT2G36380 1538 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G66950 1537 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G26910 1483 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT1G15210 1475 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT3G16340 1457 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G59870 1452 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT2G29940 1375 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT3G30842 1330 / 0 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT3G53480 1285 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G048700 [exp] 2206 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 2201 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 2158 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 2130 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 2120 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 1877 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 1875 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 1875 / 0 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 1849 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041683 [exp] 1904 / 0 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 1881 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 1855 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 1842 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 1782 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10034020 [exp] 1761 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024062 [exp] 1690 / 0 AT1G15520 1820 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10019453 [exp] 1497 / 0 AT2G26910 2354 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) Lus10041680 [exp] 1485 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024063 [exp] 1480 / 0 AT1G15520 1623 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter CL0181 [poplar] [flax] PF08370 [poplar] [flax] PDR_assoc Plant PDR ABC transporter associated
Representative CDS sequence Show only first row Show all	>Potri.001G049000.3 pacid=42791576 polypeptide=Potri.001G049000.3.p locus=Potri.001G049000 ID=Potri.001G049000.3.v4.1 annot-version=v4.1 ATGAATGAGTTTGTACCACAAAGAACAGCAGCCTATATCAGTCAACATGATCTCCACATAGGAGAAATGACCGTAAGGGAAACTTTGGCGTTCTCAGCCA GGTGCCAAGGGGTTGGATACTTGCATGAGATGTTGGCGGAGTTGTCCAGAAGAGAGAAAGAAGCCAACATTATGCCTGATCCTGATGTTGATGTCTTCAT GAAGGCAGCAGCAACACAAGCTGAAGAGGCAAATGTCAGCACCGACTATGTCTTAAAGATATTAGGATTGGAAGTCTGCGCAGACACCATGGTAGGGGAT GGAATGATAAGGGGTATCTCTGGAGGGCAAAGGAAGCGTGTTACAACTGGTGAAATGCTGGTCGGGCCATCAAGGGCATTGTTTATGGATGAGATTTCTA CCGGCTTGGACAGCTCAACAACTTACCAAATTGTGAACTCATTAAGGCAAACCGTTCACATTCTCAATTGCACCGCTGTCATCTCACTTCTCCAGCCAGC ACCGGAGACTTATGATCTCTTTGATGACATTATTCTTCTGTCAGATGGCCATATTGTGTACCAGGGGCCTCGTGATGATGTGCATGAATTTTTTGAACAT ATGGGCTTCAAGTGCCCTGAAAGAAAGGGCGTGGCTGACTTTTTGCAAGAAGTGACATCAAGGAAAGATCAAGAGCAGTACTGGGCACGTAAAGATCAGC CTTACAAGTTTGTCACCGTCAACGAATTTGCTGAGGCATTTCAATCAGTCAGCGTGGGACGAAGGATCATAGAGGAGCTTTCAATCCCATTTGACAAGAC CAAGAACCATCCAGCGGCATTGGTAAACAAAAAGTATGGAGCTGGAAAGATGGATCTGCTTAAAGCTAACTTCTCAAGAGAATACTTGCTCATGAAGAGG AACTCATTTGTCTACATCTTCAGGATATCCCAACTTACAATATTGGCAATCATTTCAATGACACTCTTCTTCCGGACCAATATGCATCGAGATACAGTCA TGGATGGTGGAATTTATACTGGTGCTTTGTTCTTCACTGTGGCCGCGATCATGTTTAATGGTACGGCAGAGCAATCTACGACCATCGCAAAGCTTCCTGT ATTTTACAAGCATAGGGAACTCCTGTTCTTTCCTCCATTGGCATATTCAATTCCTTCATGGGTCCTGAAAATTCCCATTTCATTTGTTGAAGTTGCTACT TGGGTGTTCATAACCTATTATGTAATCGGATTTGATCCAAACATTGCGAGGTTTTTTAAGCTGTACGTGGTGCTTGTGCTAATTAACCAGATGGCATCTG CACTGTTTCGATTTATTGCTGCAGCTGGAAGGAACATGATTGTTGCCAACACCTTCGGGTCATTTGTGCTCCTTGCAATTTTTGCATTGGGTGGCTTCGT CTTGTCAAGAGAGCAAATAAAGAAATGGTGGATATGGGGTTACTGGATTTCACCATTGATGTACGGGCAGAACGCAATAGTAGTGAATGAGTTCCTTGGA AATAGTTGGAGTCATATTCCTGCAGGCTCCACAGAACCACTAGGAATCCAAGTTTTGAAGAGTCGTGGGTTCTTTACAGAAGCATATTGGTATTGGATAG GAATAGGGGCGACAGTAGGATTCATACTACTATTCAATCTTTGCTTCGTTTTGGCTCTCACTTTCCTCAATGCATTTGATAAGCCTCAGGCTGTTATATC TGAAGATCCCGAAAGTGATGAATCTGCCCGCAAAACCGAACGAGCTATTCAGTTATCGAACCATGCAAGTAGTCACAGAACTAACACAGAGGGTGGAGGT GGAATTAGCAGAAGTAGTTCAGAGGCTATTGGAGAGGTCAGCAATAACAGGAAGAAAGGAATGGTTCTTCCATTTGAACCGCATTCCATCACATTCGATG ACGTTATTTACTCCGTTGACATGCCACAGGAAATGATAGTTCAAGGTGTTGATAAAGATAGATTGGTGCTTTTGAAAGGTGTGAGTGGTGCTTTCAGGCC TGGTGTCCTTACAGCTTTGATGGGTGTTAGTGGTGCTGGAAAAACAACTTTGATGGATGTTTTAGCTGGTAGGAAAACTGGTGGATATATTGAGGGAGAC ATCAAGATTTCAGGGTACCCAAAGAAGCAACAAACTTTTGCTAGAATTGCTGGATACTGTGAGCAAACTGATATTCACTCTCCACAAGTTACCGTCTATG AATCCTTACTCTACTCAGCTTGGCTTCGTCTACCCCTTGAAGTTGACTCTGAAAGCAGAAAGATGTTCATTGAGGAAGTCATGGATCTTGTGGAGTTGAA TCCATTGCGCCATGCATTAGTGGGGTTGCCTGGTGTGAATGGTTTGTCCACTGAGCAGCGCAAGCGGCTAACCATTGCAGTTGAGCTAGTTGCAAACCCT TCTATCATATTCATGGATGAGCCAACTTCAGGGCTAGATGCTAGAGCCGCTGCCATTGTGATGAGAACAGTTAGGAACACTGTGGACACAGGAAGAACAG TTGTATGCACCATCCACCAGCCTAGTATTGACATATTTGAAGCTTTTGATGAGCTATTCCTGATGAAACGAGGAGGACAAGAGATATATGTGGGGCCTCT GGGTCGCCATTCTACCCATCTAATAAAATATTTTGAGGCAATTGAAGGAGTCGGTAAAATTAGAGATGGTTATAATCCAGCAACTTGGATGCTGGAAGTT TCTAGTTCAGCACAAGAAATGGCTTTGGAGGTTGATTTTTCTAACATTTACAAGAATTCAGATCTGTTCAGGAGAAACAAAGCACTCATTGCGGGATTAA GCACACCTGCTCCTGGCTCCACAGACCTTTGTTTCCCTACGAAGTACTCAACATCATTTTTCACACAATGTATGGCTTGCTTATGGAAGCAACATTGGTC ATATTGGAGGAATCCACCATACACTGCCGTGAGATTTCTTTTCACAACCTTTATAGCCTTGATGTTTGGGACAATGTTCTGGGACCTTGGATCCAAATTG AATAGTACCCAAGATCTTTTGAATGCAATGGGTTCGATGTATGCAGCTGTTTTCTTCATTGGTGTCCAAAACGCATCATCCGTCCAGCCAGTGGTGGCTG TTGAAAGAACTGTCTTCTACAGGGAAAGAGCTGCTGGAATGTATTCAGCTTTGCCCTATGCCTTTGCACAGGTCCTGATCGAGCTTCCATATATTTTTGT TCAAGCTTCAGCCTATGGCTTTATAGTTTATGCGATGATTGGATTTGAATGGACTGTTGCGAAGTTCTTCTGGTACCTGTTCTTTATGTACTTCACATTA TTATACTTCACCTTCTACGGAATGATGGCTGTTGCAATAACTCCAAACCACCACATCGCTGCCATAGTTTCCTCTGCATTTTACGGGATATGGAACCTAT TCTCAGGGTTTATAGTTCCTCGGCCCAGCATACCTATATGGTGGAGATGGTACTATTGGGCTTGTCCAGTATCATGGTCCTTGTATGGATTGCTTGTATC CCAGTTTGGAGATATACAGAAAGACCTCACCGAAACTCAAACAGTGAAACAATTTGTGAAGGACTATTTCGGATTCGACCATGATTTTCTCGGAGTAGTT GCAGCCGCGGTTCTTGGCTGGACAGTCCTCTTTGCTTTCCTATTTGCCGCCGCTATCAAGGCCTTCAACTTCCAAAGGCGATAG
AA sequence Show only first row Show all	>Potri.001G049000.3 pacid=42791576 polypeptide=Potri.001G049000.3.p locus=Potri.001G049000 ID=Potri.001G049000.3.v4.1 annot-version=v4.1 MNEFVPQRTAAYISQHDLHIGEMTVRETLAFSARCQGVGYLHEMLAELSRREKEANIMPDPDVDVFMKAAATQAEEANVSTDYVLKILGLEVCADTMVGD GMIRGISGGQRKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRQTVHILNCTAVISLLQPAPETYDLFDDIILLSDGHIVYQGPRDDVHEFFEH MGFKCPERKGVADFLQEVTSRKDQEQYWARKDQPYKFVTVNEFAEAFQSVSVGRRIIEELSIPFDKTKNHPAALVNKKYGAGKMDLLKANFSREYLLMKR NSFVYIFRISQLTILAIISMTLFFRTNMHRDTVMDGGIYTGALFFTVAAIMFNGTAEQSTTIAKLPVFYKHRELLFFPPLAYSIPSWVLKIPISFVEVAT WVFITYYVIGFDPNIARFFKLYVVLVLINQMASALFRFIAAAGRNMIVANTFGSFVLLAIFALGGFVLSREQIKKWWIWGYWISPLMYGQNAIVVNEFLG NSWSHIPAGSTEPLGIQVLKSRGFFTEAYWYWIGIGATVGFILLFNLCFVLALTFLNAFDKPQAVISEDPESDESARKTERAIQLSNHASSHRTNTEGGG GISRSSSEAIGEVSNNRKKGMVLPFEPHSITFDDVIYSVDMPQEMIVQGVDKDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD IKISGYPKKQQTFARIAGYCEQTDIHSPQVTVYESLLYSAWLRLPLEVDSESRKMFIEEVMDLVELNPLRHALVGLPGVNGLSTEQRKRLTIAVELVANP SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSTHLIKYFEAIEGVGKIRDGYNPATWMLEV SSSAQEMALEVDFSNIYKNSDLFRRNKALIAGLSTPAPGSTDLCFPTKYSTSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTFIALMFGTMFWDLGSKL NSTQDLLNAMGSMYAAVFFIGVQNASSVQPVVAVERTVFYRERAAGMYSALPYAFAQVLIELPYIFVQASAYGFIVYAMIGFEWTVAKFFWYLFFMYFTL LYFTFYGMMAVAITPNHHIAAIVSSAFYGIWNLFSGFIVPRPSIPIWWRWYYWACPVSWSLYGLLVSQFGDIQKDLTETQTVKQFVKDYFGFDHDFLGVV AAAVLGWTVLFAFLFAAAIKAFNFQRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G049000 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.011G129000 [exp]	1.00	0.7559
AT5G58940		CRCK1	calmodulin-binding receptor-li...		Potri.009G041900 [exp]	18.86	0.7099
AT5G36930			Disease resistance protein (TI...		Potri.006G282600 [exp]	19.67	0.7096
AT1G09575			Protein of unknown function (D...		Potri.013G161300 [exp]	21.79	0.7048
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.006G023101 [exp]	30.33	0.6953
AT1G55090			carbon-nitrogen hydrolase fami...		Potri.001G087400 [exp]	31.87	0.6987
AT5G36930			Disease resistance protein (TI...		Potri.006G283400 [exp]	34.77	0.6926
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.003G137500 [exp]	35.21	0.6783
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.017G131100 [exp]	37.62	0.7042	Pt-CYTGS.5
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.018G047700 [exp]	41.00	0.6590

Compare expression of checked genes

Potri.001G049000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.