Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24800 197 / 2e-60 PRT1 proteolysis 1 (.1) AT1G18660 54 / 7e-08 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT1G74990 48 / 7e-07 RING/U-box superfamily protein (.1) AT2G42030 48 / 5e-06 RING/U-box superfamily protein (.1) AT3G58030 45 / 4e-05 RING/U-box superfamily protein (.1.2.3.4) AT2G23780 44 / 8e-05 RING/U-box superfamily protein (.1) AT1G19310 43 / 0.0001 RING/U-box superfamily protein (.1) AT4G21070 43 / 0.0002 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT4G27470 41 / 0.0005 ATRMA3 RING membrane-anchor 3 (.1) AT4G03510 41 / 0.0007 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G178700 [exp] 404 / 2e-140 AT3G24800 269 / 9e-86 proteolysis 1 (.1) Potri.002G241900 [exp] 225 / 3e-70 AT3G24800 314 / 2e-103 proteolysis 1 (.1) Potri.012G068100 [exp] 52 / 2e-07 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Potri.007G031600 [exp] 47 / 5e-06 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.006G193600 [exp] 47 / 7e-06 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.016G058300 [exp] 47 / 8e-06 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.005G127900 [exp] 45 / 1e-05 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.004G042700 [exp] 44 / 6e-05 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2) Potri.002G133000 [exp] 44 / 7e-05 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025930 [exp] 181 / 1e-53 AT3G24800 287 / 2e-93 proteolysis 1 (.1) Lus10038169 [exp] 185 / 1e-52 AT5G48800 482 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015722 [exp] 55 / 3e-08 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10019075 [exp] 54 / 7e-08 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10022492 [exp] 47 / 7e-06 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10016796 [exp] 47 / 7e-06 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10016255 [exp] 47 / 8e-06 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10029292 [exp] 47 / 8e-06 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4) Lus10021063 [exp] 44 / 7e-05 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10010791 [exp] 44 / 8e-05 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.001G049300.1 pacid=42792306 polypeptide=Potri.001G049300.1.p locus=Potri.001G049300 ID=Potri.001G049300.1.v4.1 annot-version=v4.1 ATGGAAAATCAAGAAAACAACAGAACCCCATCAGCAGAAGAATCGAAAATGCAATGCCAAAACGATAATAACTATGAAATTCCATCCTCAAAACATCATC ACCAAAGGGAAGAAGGCAATGACCATGAAGAAGAACAGGATTTCCTTGGCCAGTTTCAGTGCCCTGTTTGCCTGGACCTACTTTACAAGCCAGTTGTTTT AGCATGTGGCCACTTTTCATGCTTCTGGTGTGTATTTCGTTGCATGAATGGCTTTCGCGAGTCACACTGTCCAATTTGTCGGCACCCATTTAATCACTTC CCACGTGTGTGTCAATTGCTGCATTTCTTACTTATGAAGATGTGCCCTATAGCCTATAAGACAAGGGAAGGAGAAGTGGAAGAAGAAGAAAAGAAATTTG GCCTTTTCTCTCCACAGTTTGGTCATCATTCATCTGGATCACTTCCTGGTGAAGAGCTAGATGTCCCAAGCAATTCTCTACGTCTACCCACCCATTCACA AACCAAATTGGGTTATGATAGTTGTTTTTCTTTAGGGAATTTTCCAGAGGCAATTGCACATAGTGTGGATAATGTGAAAATTATGCCTTCATCACCATTA AGTATATCTGAAGGCACTGCGAATGCAGCCATCAAAAGTTGCAACTTGATTAGGACAGGGCTTGGACGTGGAATTCAAAAGCAGGCCTCTGTTGCTGACT TGCTGTGTGCTGAATGCAAGAAACTGCTGTTTCGACCAGTAGTTCTTAATTGTGGCCATGTTTATTGTGAATCTTGTATCATCATCCCCATGCAAGGAAT TCCTAGGTGTCAATTTTGTCAAAGTTTGCATCCAAATGGGTTCCCGGGTGTTTGTTTAGTTCTAGAGAATTTTTTGGAGGAGCACTTTTCTGAAATTTAT GCAGGGAGATGA
AA sequence Show only first row Show all	>Potri.001G049300.1 pacid=42792306 polypeptide=Potri.001G049300.1.p locus=Potri.001G049300 ID=Potri.001G049300.1.v4.1 annot-version=v4.1 MENQENNRTPSAEESKMQCQNDNNYEIPSSKHHHQREEGNDHEEEQDFLGQFQCPVCLDLLYKPVVLACGHFSCFWCVFRCMNGFRESHCPICRHPFNHF PRVCQLLHFLLMKMCPIAYKTREGEVEEEEKKFGLFSPQFGHHSSGSLPGEELDVPSNSLRLPTHSQTKLGYDSCFSLGNFPEAIAHSVDNVKIMPSSPL SISEGTANAAIKSCNLIRTGLGRGIQKQASVADLLCAECKKLLFRPVVLNCGHVYCESCIIIPMQGIPRCQFCQSLHPNGFPGVCLVLENFLEEHFSEIY AGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.001G049300 [exp]	0	1
AT2G34460			NAD(P)-binding Rossmann-fold s...		Potri.011G079600 [exp]	2.00	0.9648
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G057800 [exp]	3.46	0.9540
AT3G02450			cell division protein ftsH, pu...		Potri.004G106500 [exp]	3.74	0.9661
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Potri.005G095300 [exp]	4.58	0.9510	Pt-MST2.1
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.003G103300 [exp]	5.19	0.9643
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Potri.010G087600 [exp]	5.74	0.9549
AT4G39470			Tetratricopeptide repeat (TPR)...		Potri.007G079200 [exp]	5.74	0.9482
AT3G46630			Protein of unknown function (D...		Potri.014G023400 [exp]	7.07	0.9588
AT5G61040			unknown protein		Potri.008G096100 [exp]	7.34	0.9585
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Potri.001G144500 [exp]	8.24	0.9611	NAP6.2

Compare expression of checked genes

Potri.001G049300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.