Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32700 1057 / 0 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) AT4G32551 494 / 1e-162 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) AT2G41500 105 / 1e-23 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT4G02730 93 / 3e-20 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 90 / 3e-19 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 92 / 5e-19 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT1G61210 86 / 8e-17 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 80 / 4e-15 TAF5 TBP-associated factor 5 (.1) AT3G18130 77 / 9e-15 RACK1C_AT receptor for activated C kinase 1C (.1) AT2G33340 77 / 2e-14 MAC3B MOS4-associated complex 3B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G178600 [exp] 1302 / 0 AT2G32700 1051 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.002G241800 [exp] 930 / 0 AT2G32700 899 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.006G248100 [exp] 489 / 6e-161 AT4G32551 996 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.018G033300 [exp] 482 / 2e-157 AT4G32551 657 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.004G045601 [exp] 390 / 2e-125 AT2G32700 354 / 1e-111 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.002G051900 [exp] 100 / 6e-23 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 99 / 2e-21 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.008G002300 [exp] 97 / 1e-20 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 89 / 6e-18 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043135 [exp] 1123 / 0 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10032614 [exp] 1119 / 0 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10022797 [exp] 899 / 0 AT2G32700 903 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10011863 [exp] 889 / 0 AT2G32700 909 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10017754 [exp] 426 / 3e-136 AT4G32551 778 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10033066 [exp] 419 / 2e-134 AT4G32551 746 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10014674 [exp] 100 / 8e-23 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 100 / 1e-22 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 102 / 2e-22 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 99 / 3e-21 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0561 [poplar] [flax] LisH PF08513 [poplar] [flax] LisH LisH
Representative CDS sequence Show only first row Show all	>Potri.001G049400.5 pacid=42793595 polypeptide=Potri.001G049400.5.p locus=Potri.001G049400 ID=Potri.001G049400.5.v4.1 annot-version=v4.1 ATGGCACAGAGTAATTGGGAAGCAGATAAAATGCTTGATGTGTACATATATGATTATTTGGTGAAGAAGAAATTGCATGCTACTGCAAAATCATTCATGA CTGAGGGGAAAGTTCACCCCGATCCAGTAGCGATTGATGCTCCTGGGGGGTTTCTTTTTGAATGGTGGTCTGTCTTCTGGGATATTTTTATAGCAAGGAC AAATGAGAAACATTCCGAGACTGCTGCAGCGTATTTAGAGGCACAGCAAAGCAAGACAAAGGAACATCAACAGCTGCAACTAATGCGTCAAGCTCAGTTG CAACGAGGGGGTCCTAATAATCCAATCGTTGGGGGTCCGGTAAATTCTATTGGTTCTGAAGGAATGCTCGGGCAATCAAATGCCAGTGCACTGGCTGCAA AAATGTATGAGGAACGTATGAAGCATTCCAACCAAATGGAGTCTGAAACATCCCAACCGCATCTTGATGCTAGGATGGCCCTCCTCAAATCAACTACAAA CCACCCAGGCCAATTGGTCCAAGGAAATCCTGGGAATGTTACTGCAGCACTGCAGCAAATCCAGGATGTCAAACCTGAAGTGAGCCTGGGTGCTGCCCAG AGATCTTTGCCTATGGACCCTTCAACCATTTATGGGCAGGGAATCATGCAGTCAAAACCTGGAATTGGAAATGCAGGATTGAACCCTGGAGTCAATGGTC TTCCCTTGAGGGGATGGCCCTTAACGGGACTTGAACAAATTCGTCCAAGTTTGGGTGCACAAGTTCAAAGGCCTCTTTTACATGGTCCTAGTCAGTTTCA GCTTTTGCCACAGCAACAACAACAGCAGTTATTGGCACAGGTCCAGGCACAAGGCAATCTTGCTGCTTCACCAATGTATGGAGATATGGATTCACGGAAG TTTAGGGGATTGCCAAGAGGGGCTTTGAACAGCAAAGATGGCCAACCAAATGTGAACGATGGTTCTATCGGTTCTCCAATGCATTCAACTTCATCTAAGA TGAATTTGCCACAGATGCAACAATCATCCTCTCAACAAGATCCTTTGCACCCACAGCAGGTTAATAACCGAAAGAGGAAAGGCCCTTCATCTTCTGGACC TGCTAATAGTACCGGTACTGGAAATACAGTAGGCCCTTCTAATTCACAACCATCAACTCCATCAACTCATACTCCTGGTGATGGGATTGCCACAGCTGGC AATTTACAGCATGTCAATAGCATGCCAAAAGGTTTGATGTACAGTGGTGATGCAACTGGAGCTCTTGCATCATCCACAAACCCACTGGAAGACATTGAGC ATTTTGCAGATGTTGGCTCCTTAGATGATAATGTGGAATCTTTTTTATCCCATGATGATGGAGATGGAAGGGATTTGTTTGGTACTTTAAAAAGGAATTC CTCTGAACATGCTGCTGAAGCTTCAAAGGGTTTCAACTTCAGTGAAGTTAGTTCGATACGCAAAAGTAATGGGAAAGTTGTTTGCTGTCACTTCTCTACA GATGGGAAATTGTTGGCCAGTGCTGGGCATGACAAGAAGGTTGTTCTTTGGAACATGGAAACTCTGCAAACTGAGTGCACTCAGGAAGAGCATACCCACA TTATTACTGATGTTCGTTTCAGGCCAAATTCAACTCAGCTGGCAACATCGTCATTTGATACAAGTGTACGCCTCTGGGATGCTGCAGAACCAAGGTATTC CTTGCAGACATTCACAGGGCATACCTCACATGTGGTGTCCCTTGACTTCCACCCTAAGAAGAATGATCTTTTCTGTTCCTGTGATGGTAACAATGAGATT CGCTTTTGGAACATCAATCAGTATCCTTGCACCCGGATATCCAAGGGAGGGACTACACAAGTTAGATTTCAGCCAAGAATCGGACAACTGCTGGCTGCAG CTTCAGATAATGTCGTATCCATCTTTGATATTGAGTCTGACAGACAGACACACTCATTACAGGGGCACTCCACAGAGGTGCATTCTGTTTGTTGGGATGT AAACGGGGAGTACTTGGCTTCTGTCAGTCAAGAGTCTGTTAGAGTGTGGTCATTGGCCACGGGAGATTGCATTCATGAACTTAGTTCGAGTGGGAACAAG TTCCATTCTTGTGTTTTCCATCCAAGCTATGCCACTCTCTTGGTTATTGGAGGATACCAGTCATTGGAGCTCTGGAACATGGCGGAGAACAAGTGTATGA CAGTTGCAGCTCATGAGTGTGTGATATCAGCTTTGGCTCAATCACAAGCTACAGGGATGGTTGCTTCTGCAAGTCATGACAAATGTGTGAAGATATGGAA ATAA
AA sequence Show only first row Show all	>Potri.001G049400.5 pacid=42793595 polypeptide=Potri.001G049400.5.p locus=Potri.001G049400 ID=Potri.001G049400.5.v4.1 annot-version=v4.1 MAQSNWEADKMLDVYIYDYLVKKKLHATAKSFMTEGKVHPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQSKTKEHQQLQLMRQAQL QRGGPNNPIVGGPVNSIGSEGMLGQSNASALAAKMYEERMKHSNQMESETSQPHLDARMALLKSTTNHPGQLVQGNPGNVTAALQQIQDVKPEVSLGAAQ RSLPMDPSTIYGQGIMQSKPGIGNAGLNPGVNGLPLRGWPLTGLEQIRPSLGAQVQRPLLHGPSQFQLLPQQQQQQLLAQVQAQGNLAASPMYGDMDSRK FRGLPRGALNSKDGQPNVNDGSIGSPMHSTSSKMNLPQMQQSSSQQDPLHPQQVNNRKRKGPSSSGPANSTGTGNTVGPSNSQPSTPSTHTPGDGIATAG NLQHVNSMPKGLMYSGDATGALASSTNPLEDIEHFADVGSLDDNVESFLSHDDGDGRDLFGTLKRNSSEHAAEASKGFNFSEVSSIRKSNGKVVCCHFST DGKLLASAGHDKKVVLWNMETLQTECTQEEHTHIITDVRFRPNSTQLATSSFDTSVRLWDAAEPRYSLQTFTGHTSHVVSLDFHPKKNDLFCSCDGNNEI RFWNINQYPCTRISKGGTTQVRFQPRIGQLLAAASDNVVSIFDIESDRQTHSLQGHSTEVHSVCWDVNGEYLASVSQESVRVWSLATGDCIHELSSSGNK FHSCVFHPSYATLLVIGGYQSLELWNMAENKCMTVAAHECVISALAQSQATGMVASASHDKCVKIWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.001G049400 [exp]	0	1
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Potri.005G123000 [exp]	6.00	0.5995
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.017G091000 [exp]	6.92	0.6356
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Potri.002G166500 [exp]	10.72	0.5926
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Potri.018G072600 [exp]	13.45	0.6379
AT5G42140			Regulator of chromosome conden...		Potri.005G190000 [exp]	19.18	0.5820
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Potri.013G032100 [exp]	25.57	0.5922
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Potri.016G129000 [exp]	36.37	0.5076
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Potri.002G170100 [exp]	47.74	0.4975
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Potri.012G075100 [exp]	49.14	0.5532	Pt-PI3.1
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Potri.015G049500 [exp]	52.01	0.5706	SCD1.3

Compare expression of checked genes

Potri.001G049400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.