Plant FIBer expression Database

Potri.001G049501 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G049501.1 pacid=42787889 polypeptide=Potri.001G049501.1.p locus=Potri.001G049501 ID=Potri.001G049501.1.v4.1 annot-version=v4.1
ATGGGCCTTGTAACTGGTCACCGTGTTGTGGGGGCTCTCTTGTGTGCTTTTCTTCTGAATGCTTTAGTTGTGGCTGATCATGTTACTACTGGTGACAAAG
ACGATAAGCACTTTTTGGGTCATCCCCATTTGTTGAAGAAGGGGTTTATACACGGCCGTAGGTTTGGTGGCGGCGGCGGCATAGGAGGTGGTGCAGGTGG
AGGACTTGGTGGTGGTATCGGAGGTGGTGTGGGTGGTGGCTTTGGTGGAGGTGCAGGGGGTGGCGGCGGCCTTGGAGGTGGTGCTGGAGATGGACTTGGA
GGTGGACTCGGTGGTGGTGCGGGTGGTGGATTTGGTGGAGGCGTAGGGGGTGGCGGCGGCCTTGGAGGTGGTGCAGGAGGTGGATTCGGTGGTGGTGATG
GTGGAGGCCTTGGAGGTGGTGGTGGGCTAGGAGGTGGACATGGTGGCGGTCTAGGTGGTGGCATTGGTCATGGTGGTGGTTTAGGTGGTGGTATTGGACA
TGGTGGCGGTCTAGGAGGTGGCGGTGGACTAGGAGGAGGTGCTGGAGGTGGTCTAGGCGGTGGACATGGTGGAGGTCTTGGTGGGGGCGGTGGAGCTGGT
GGCGGTCTAGGAGGTGGCGGTGGACTAGGAGGAGGTGCTGGAGGTGGTCTAGGTGGTGGACATGGTGGAGGTCTTGGTGGGGGCGGTGGAGCTGGTGGCG
GTCTAGGAGGTGGCGCTGGTGGAGGGCTAGGTGGTGGAGCTGGTGGAGGAGCTGGTGGTGGTGGTGGGCTTGGAGGTGGAGCTGGTGGAGGGCTAGGTGG
TGGAGGTGGAGCTGGTGGAGGGCTTGGTGGTGGTGGTGGGCTTGGAGGTGGAGGTGGAGCTGGTGGAGGGCTTGGTGGTGGTGGTGGGCTTGGAGGTGGA
GGTGGAGCTGGTGGAGGGCTTGGTGGTAGTGGTGGGCTTGGAGGCGGTGCAGGTGGCGGTGGAGGATTTGGGGGAGGTGGTGGTGTTGGTGGAGGTGTTG
GAGGAGGGTTTGGAGCTGGTGGTGGTGTTGGTGGTGGACTAGGTGGCGCCGGTGGAGGTGGTGGGTTTGGAGGAGGTGGTGGTGGTGGTCACTAA
AA sequence
>Potri.001G049501.1 pacid=42787889 polypeptide=Potri.001G049501.1.p locus=Potri.001G049501 ID=Potri.001G049501.1.v4.1 annot-version=v4.1
MGLVTGHRVVGALLCAFLLNALVVADHVTTGDKDDKHFLGHPHLLKKGFIHGRRFGGGGGIGGGAGGGLGGGIGGGVGGGFGGGAGGGGGLGGGAGDGLG
GGLGGGAGGGFGGGVGGGGGLGGGAGGGFGGGDGGGLGGGGGLGGGHGGGLGGGIGHGGGLGGGIGHGGGLGGGGGLGGGAGGGLGGGHGGGLGGGGGAG
GGLGGGGGLGGGAGGGLGGGHGGGLGGGGGAGGGLGGGAGGGLGGGAGGGAGGGGGLGGGAGGGLGGGGGAGGGLGGGGGLGGGGGAGGGLGGGGGLGGG
GGAGGGLGGSGGLGGGAGGGGGFGGGGGVGGGVGGGFGAGGGVGGGLGGAGGGGGFGGGGGGGH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G049501
[exp]
0 1
AT2G22590 UDP-Glycosyltransferase superf... Potri.018G140401
[exp]
3.00 0.9656
AT3G48200 unknown protein Potri.001G330000
[exp]
3.46 0.9581
Potri.001G021300
[exp]
3.46 0.9611
AT5G49100 unknown protein Potri.010G012000
[exp]
4.47 0.9651
AT5G45960 GDSL-like Lipase/Acylhydrolase... Potri.011G062000
[exp]
5.65 0.9550
Potri.005G211050
[exp]
7.07 0.9590
AT1G04500 CCT motif family protein (.1) Potri.008G171500
[exp]
11.48 0.9530
AT5G14410 unknown protein Potri.001G342100
[exp]
13.22 0.9519
AT1G14440 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, hom... Potri.002G035200
[exp]
13.78 0.9539
AT2G18350 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, hom... Potri.005G227900
[exp]
14.07 0.9489

Potri.001G049501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.