Plant FIBer expression Database

Potri.001G049700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G178500
[exp]
136 / 3e-42 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G049700.1 pacid=42793561 polypeptide=Potri.001G049700.1.p locus=Potri.001G049700 ID=Potri.001G049700.1.v4.1 annot-version=v4.1
ATGGATATTGATCCCTTCTGGATTACTGGGGGGTGGCTCATAATTACCGATTTTAACTTCATGGCACCAACTAGAAAATCACCACTGTGCAGAACCACGA
CAAAATTACAAGCTATGGTGCTTTTTCTTGATCTTCTCTTGATTGTCCCTCTCCTTGCTCGTCCCATAGATTTATCCAAGAAACTCACAGCGGCTTCCTC
ACCTACAGGAACAAAACATTCTACCACAGAAATGCATCCACATGAATCAAAGTATGCACCACCTTCTAGTACCACTGCCGCCGCCGCCGCCGCTGATATG
ACAAGCAGTACCACCACCACAGTTCCTACCACTCCCGCAGCTTCTGCTTCAAATCAACAGTTTAAAGCCGCTGCCCATGAAGTACCTAGTGGTCCAAATC
CCGAATCCAATTAA
AA sequence
>Potri.001G049700.1 pacid=42793561 polypeptide=Potri.001G049700.1.p locus=Potri.001G049700 ID=Potri.001G049700.1.v4.1 annot-version=v4.1
MDIDPFWITGGWLIITDFNFMAPTRKSPLCRTTTKLQAMVLFLDLLLIVPLLARPIDLSKKLTAASSPTGTKHSTTEMHPHESKYAPPSSTTAAAAAADM
TSSTTTTVPTTPAASASNQQFKAAAHEVPSGPNPESN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G049700
[exp]
0 1
AT4G31980 unknown protein Potri.013G146600
[exp]
3.00 0.9269
AT3G50150 Plant protein of unknown funct... Potri.013G146700
[exp]
3.74 0.9132
Potri.010G190900
[exp]
6.48 0.8926
AT5G10770 Eukaryotic aspartyl protease f... Potri.018G014800
[exp]
7.74 0.8769
AT5G18290 SIP1B, SIP1;2 SMALL AND BASIC INTRINSIC PROT... Potri.014G154400
[exp]
9.00 0.8488
AT1G76160 SKS5 SKU5 similar 5 (.1) Potri.002G227600
[exp]
11.53 0.8851
Potri.017G040750
[exp]
12.00 0.8341
AT3G44735 PSK1, ATPSK3 PHYTOSULFOKINE 3 PRECURSOR (.1... Potri.009G148900
[exp]
12.40 0.8759 Pt-PSK6.1
AT5G09810 ACT2/7, ACT7 actin 7 (.1) Potri.001G453600
[exp]
12.68 0.8546
AT3G05620 Plant invertase/pectin methyle... Potri.013G013200
[exp]
12.84 0.9020

Potri.001G049700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.