Plant FIBer expression Database

Pt-PMP.1 (Potri.001G049800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PMP.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24160 304 / 2e-101 PMP putative type 1 membrane protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G178400
[exp]
570 / 0 AT3G24160 295 / 7e-98 putative type 1 membrane protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000760
[exp]
346 / 8e-118 AT3G24160 270 / 5e-88 putative type 1 membrane protein (.1)
PFAM info
Representative CDS sequence
>Potri.001G049800.1 pacid=42788882 polypeptide=Potri.001G049800.1.p locus=Potri.001G049800 ID=Potri.001G049800.1.v4.1 annot-version=v4.1
ATGGATTTCCAAATACGCAGCGTTTTGCATCTGTTCGTCATCTTCTCTCTTCTCTTCTCATTAGCTAAGGCTGAGACTGCTGGCTCGGTTTTTTTCATCG
ATAGCCAGACTCGTCAATATCTGCGCACTCCATCACCAAAAGATGTCGTCCAGTCCATGTCACTTCGAGAAGTTGGTGCTGCTGTGTCAGTCTTGCTTGG
TTTTGCGCCATCAGATGCTCTTTCAGCTGCTAGTTCATCGAAGTTGAACGAGGTTCTCATGCCTAATCCGTTTAACAGGCCTCGTGCTGTTTTCATGCTG
GAAGTCACTGGAGAAATCCCATCTGTGGCTGAACAAGCAAATGCCATGTTCAATGGTGCCTTCAAGAGCAAGATTGTTCTTGGTTCAGATAAGGCTGGCA
TTGAACTTCCAGGTGAAGAGGTTTCAGTGGTTTCTCTAGATGAAGAGTTGGCAGACTTCACTGACAAGGAAATTAGTGATTTTGCATCTTGGTTGGGTGG
ATCATATGTTGTTGATCCCTTGGAAGCATGGAATGGAGAGTTAGCAATCCCACTGGCTAGCGGTGCCACTACAAGTTTTCATATGTCTAAGAAAGCAAAC
AGGGAGTTTATAGCAAGTCTTCTTGCTCTGTTCCGCAATAGTAGAAGAGCAGTAGAGATGCATGAAGATTTGTCGCAGAGCACTCAACCACCTGCAGAGT
TATTGAAGGGCTGTTTTGATGGTCTCAAGGCTTTGGGAGAGCAATATGGACCCGAGGGTGCTGCACAGAAAGGGCTGGAGCTATTACTTACTACATTGTC
CAAGATGTTTGATTCATTGCAAACAGCTTACAAAGGTCAAATTGCCGGAGTAATCTTTTTTAACACCGCACCTGCATCAGAATCAGAAACAGTGCTGGAT
GTCATGCTGACTTCCCAGCCATCTGCACGTTGGTTGGAAGAAACAAAAACACCTAGCAATGGAACCATTGCAGAAGTGGCCTTAGTTAGAATGACCCTTG
CTTGGATAACTGGAATTGTTCTTATCATTGCTACTCTTTTGGGGATCTACTATCTCCTCAATATGCCAATCACAAGGGACACCCTTCTCTACTCCAACGT
CAAGCTTGACTAA
AA sequence
>Potri.001G049800.1 pacid=42788882 polypeptide=Potri.001G049800.1.p locus=Potri.001G049800 ID=Potri.001G049800.1.v4.1 annot-version=v4.1
MDFQIRSVLHLFVIFSLLFSLAKAETAGSVFFIDSQTRQYLRTPSPKDVVQSMSLREVGAAVSVLLGFAPSDALSAASSSKLNEVLMPNPFNRPRAVFML
EVTGEIPSVAEQANAMFNGAFKSKIVLGSDKAGIELPGEEVSVVSLDEELADFTDKEISDFASWLGGSYVVDPLEAWNGELAIPLASGATTSFHMSKKAN
REFIASLLALFRNSRRAVEMHEDLSQSTQPPAELLKGCFDGLKALGEQYGPEGAAQKGLELLLTTLSKMFDSLQTAYKGQIAGVIFFNTAPASESETVLD
VMLTSQPSARWLEETKTPSNGTIAEVALVRMTLAWITGIVLIIATLLGIYYLLNMPITRDTLLYSNVKLD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G24160 PMP putative type 1 membrane prote... Potri.001G049800
[exp]
0 1 Pt-PMP.1
AT5G62930 SGNH hydrolase-type esterase s... Potri.012G081900
[exp]
1.00 0.8661
AT5G17630 Nucleotide/sugar transporter f... Potri.013G071900
[exp]
2.00 0.8408
AT3G53000 ATPP2-A15 phloem protein 2-A15 (.1) Potri.006G117600
[exp]
2.44 0.8369
AT3G09735 S1FA-like DNA-binding protein ... Potri.006G130200
[exp]
3.46 0.8525 S1FA3.1
AT3G19184 B3 AP2/B3-like transcriptional fa... Potri.007G042500
[exp]
13.30 0.7531
AT1G08750 Peptidase C13 family (.1.2.3) Potri.019G014000
[exp]
13.41 0.7979
AT4G22330 ATCES1 Alkaline phytoceramidase (aPHC... Potri.017G057500
[exp]
13.63 0.8521
AT3G52300 ATPQ "ATP synthase D chain, mitocho... Potri.008G043800
[exp]
15.58 0.8336
AT5G24170 Got1/Sft2-like vescicle transp... Potri.012G012700
[exp]
27.92 0.8383
AT2G37975 Yos1-like protein (.1) Potri.008G063000
[exp]
31.08 0.7972

Potri.001G049800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.