Plant FIBer expression Database

Potri.001G049900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G13670 318 / 4e-106 PTAC5 plastid transcriptionally active 5 (.1)
AT2G34860 40 / 0.0008 EDA3 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000759
[exp]
308 / 8e-102 AT4G13670 379 / 5e-130 plastid transcriptionally active 5 (.1)
Lus10011733
[exp]
301 / 2e-99 AT4G13670 368 / 7e-126 plastid transcriptionally active 5 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0244 PGBD PF01471 PG_binding_1 Putative peptidoglycan binding domain
Representative CDS sequence
>Potri.001G049900.1 pacid=42792354 polypeptide=Potri.001G049900.1.p locus=Potri.001G049900 ID=Potri.001G049900.1.v4.1 annot-version=v4.1
ATGATGATGAGAATGTCTTCTTCTAGTTTTCCCCTCTCTCTAAATCCTAAACCTTTTCATCCCCACAAGCAATCTCACAGCACACACTCTCCACTCCAAT
TCTCCAAACACACAACAGTACTACCACTCTCGCGCTCTACTCTTTCAAAACCTCATTACATCTGCTTCTCTTCTAATCCAGACCGAGAGGAATCCCGGTG
GCTCCGAGAGGAACAGCGGTGGCTACGTGAAGAGGAAAGGTGGCTCCGTGAAGAGAAGCGTTGGAGCTGCGACAGAGAATCGCTCCTCGCTCAAATACAA
TCCTTAAAGCTTCAAATCGAAGCACTAGAGAATCGAATCTCAGTCCTTCAAGGAGGAGAGGATACGGTAGCTAAAGTAGGGTTGTTACTGCAGGTTTTGA
AAGACAAGAATAATAACAATTTGATTGCAGAGAGTGGGTCCAGTGCGAGACCTCTTGTGTTGGAGGAGAATGTGGTGGAAGAACAGAAGGAAGTGATTGA
TAGGGTTTTGGAGGAGAAGAAGGAGAGGAAAACCCTAAGGAAAGGAAGCGAAGGAGAACAAGTAAAAGAGATGCAGGACGCTTTGCAAAAATTGGGATTT
TACTCAGGGGAAGAAGACATGGAATATTCTAGCTTCTCAAGTGGGACTGAACGTGCTGTGAGGACCTGGCAAGCATCTTTAGGTGCCTCTGAAGATGGAA
TAATGACTACAGAGCTCCTCAAAAGGTTATATATGGAGCAACATATTGATGCTCGGATGCCAAGTATTAGCGAAACTCAAAAGGGAAGCGCTCAAACTGT
TCCAGCAGAGGAAGGTGCCGATGGAGCTGCTGTTACGTCTGTAACAGAAATCTCAGAAATACATCAGAAAGTTGTGAAAGAAGAAGTGACAGAAGTTGAT
GTATCGCATCATAGAGTATTTCTTCTTGGGGAGAATCGTTGGGAAGAACCTTCTAGACTTAATGGCAGAAAGAAACAAGTTAGCGGGAGCAAAACGAAGG
ATTCCACAAAACAGTGCCTTACATGTCGTGGGGAGGGTCGTTTGCTGTGCACAGAATGTGATGGTACTGGTGAGCCAAACGTGGAGCCACAGTTTTTGGA
ATGGGTTGGTGAAGGAGCAAATTGTCCTTACTGTGAAGGACAAGGGTATACAATATGTGATGTGTGTGCAGGAAAAACAACAATTTAG
AA sequence
>Potri.001G049900.1 pacid=42792354 polypeptide=Potri.001G049900.1.p locus=Potri.001G049900 ID=Potri.001G049900.1.v4.1 annot-version=v4.1
MMMRMSSSSFPLSLNPKPFHPHKQSHSTHSPLQFSKHTTVLPLSRSTLSKPHYICFSSNPDREESRWLREEQRWLREEERWLREEKRWSCDRESLLAQIQ
SLKLQIEALENRISVLQGGEDTVAKVGLLLQVLKDKNNNNLIAESGSSARPLVLEENVVEEQKEVIDRVLEEKKERKTLRKGSEGEQVKEMQDALQKLGF
YSGEEDMEYSSFSSGTERAVRTWQASLGASEDGIMTTELLKRLYMEQHIDARMPSISETQKGSAQTVPAEEGADGAAVTSVTEISEIHQKVVKEEVTEVD
VSHHRVFLLGENRWEEPSRLNGRKKQVSGSKTKDSTKQCLTCRGEGRLLCTECDGTGEPNVEPQFLEWVGEGANCPYCEGQGYTICDVCAGKTTI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G13670 PTAC5 plastid transcriptionally acti... Potri.001G049900
[exp]
0 1
AT5G46580 pentatricopeptide (PPR) repeat... Potri.003G089600
[exp]
1.73 0.9851
AT2G42750 DNAJ heat shock N-terminal dom... Potri.014G143400
[exp]
2.00 0.9841
AT5G05200 Protein kinase superfamily pro... Potri.019G061300
[exp]
2.44 0.9824
AT1G10500 ATCPISCA chloroplast-localized ISCA-lik... Potri.005G085400
[exp]
3.46 0.9757
AT1G02150 Tetratricopeptide repeat (TPR)... Potri.014G050300
[exp]
4.47 0.9785
AT1G27385 unknown protein Potri.001G056500
[exp]
5.29 0.9748
AT2G43950 OEP37, ATOEP37 ARABIDOPSIS CHLOROPLAST OUTER ... Potri.017G007300
[exp]
5.91 0.9768
AT4G16390 SVR7 suppressor of variegation 7, p... Potri.016G006800
[exp]
8.24 0.9706
AT3G15840 PIFI post-illumination chlorophyll ... Potri.001G204300
[exp]
8.48 0.9736
AT3G62410 CP12-2 CP12 DOMAIN-CONTAINING PROTEIN... Potri.014G120700
[exp]
9.16 0.9728

Potri.001G049900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.