Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02360 219 / 8e-71 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02240 213 / 5e-68 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02250 206 / 2e-65 ATPP2-B2 phloem protein 2-B2 (.1) AT5G24560 196 / 4e-62 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02340 196 / 3e-61 ATPP2-B8 phloem protein 2-B8 (.1) AT2G02230 196 / 6e-61 ATPP2-B1 phloem protein 2-B1 (.1) AT1G80110 192 / 2e-60 ATPP2-B11 phloem protein 2-B11 (.1) AT1G09155 183 / 1e-56 ATPP2-B15 phloem protein 2-B15 (.1) AT2G02300 171 / 4e-52 ATPP2-B5 phloem protein 2-B5 (.1) AT2G02310 171 / 9e-52 ATPP2-B6 phloem protein 2-B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267000 [exp] 227 / 2e-73 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 220 / 8e-71 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.005G022000 [exp] 215 / 4e-69 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.018G016000 [exp] 211 / 2e-67 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.018G016100 [exp] 207 / 6e-66 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.006G266900 [exp] 206 / 3e-65 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.013G012600 [exp] 196 / 7e-62 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.013G012666 [exp] 105 / 6e-28 AT1G09155 120 / 2e-33 phloem protein 2-B15 (.1) Potri.006G117600 [exp] 107 / 2e-27 AT3G53000 486 / 2e-175 phloem protein 2-A15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020674 [exp] 203 / 3e-64 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10029674 [exp] 202 / 8e-64 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10029872 [exp] 199 / 7e-63 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10042713 [exp] 198 / 5e-62 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10018171 [exp] 196 / 8e-61 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10025666 [exp] 193 / 1e-59 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10015208 [exp] 186 / 2e-57 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10031484 [exp] 184 / 2e-56 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1) Lus10020673 [exp] 175 / 2e-53 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10008898 [exp] 174 / 4e-53 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0271 [poplar] [flax] PF14299 [poplar] [flax] PP2 Phloem protein 2
Representative CDS sequence Show only first row Show all	>Potri.001G050100.1 pacid=42789731 polypeptide=Potri.001G050100.1.p locus=Potri.001G050100 ID=Potri.001G050100.1.v4.1 annot-version=v4.1 ATGGATATGTCCCAGGTTCTCCCAGAGGAGTGCCTAGCCCACATCATTTCCTTCACATCGCCACGGGATGCTTGCGGATCTGCTCTGGTCTCTCGTAACT TCCGGTCAGCCGCAGATTCTGATGCCGTTTGGAAAGGATTTCTGCCCTCCGATCATGTTGAAATCATATCCTCCTCGCCAGCCTCATCATCCTCACAGCT AACCGCTTTATCCAAGAAGGAACTTTACTTCCATCTTTGTAACAACCCTATCCTCGTCAACAATGGTATCATGAGCTTTGCACTAGAGAAGCATGGTGGG AAAAAATGCTACATGATTGGAGCAAGAGGACTTTCAATTACCTGGGGAGATACACCTGACTATTGGACATGGAAACCCTTACCAGATCAGTCTAGGTTCT CTGAGGTGGCTGAGCTTAGGTACGTGTGGTGGCTTGATGTCAGGGGGAGGATAGATGCTAAAATCTTTTCTCCCAAAACAACCTATGCAGCTTACCTTGT GTTTAAGCTGACTGATTCCACAAGGGGTTTTGATGAGAGACTTGTTGAACTGAGTGTCAACTTTGAAGAAAGTGTGGGCGAGGAAAAGCTCCATGTGTTC CTCGATGTCCCTCCAGACTATGATATGCCTCCACTGCCTCGGGAGAGAAGCGATGGGTGGATGGAGATTGAGATGGGTGAGTTTTTCTATGACAATGAAG ATGATGGCAGCGTGGTGGCGTATCTAAGGGAGGTTGATAATTACACTACCAAGAATGGTCTCATTATTGAAGGAATTGAGTTTAGGCCTAAAGAGGTTAG ATGA
AA sequence Show only first row Show all	>Potri.001G050100.1 pacid=42789731 polypeptide=Potri.001G050100.1.p locus=Potri.001G050100 ID=Potri.001G050100.1.v4.1 annot-version=v4.1 MDMSQVLPEECLAHIISFTSPRDACGSALVSRNFRSAADSDAVWKGFLPSDHVEIISSSPASSSSQLTALSKKELYFHLCNNPILVNNGIMSFALEKHGG KKCYMIGARGLSITWGDTPDYWTWKPLPDQSRFSEVAELRYVWWLDVRGRIDAKIFSPKTTYAAYLVFKLTDSTRGFDERLVELSVNFEESVGEEKLHVF LDVPPDYDMPPLPRERSDGWMEIEMGEFFYDNEDDGSVVAYLREVDNYTTKNGLIIEGIEFRPKEVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Potri.001G050100 [exp]	0	1
AT4G39150			DNAJ heat shock N-terminal dom...		Potri.004G158300 [exp]	1.41	0.8541
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.002G183000 [exp]	2.00	0.8364
AT5G25240			unknown protein		Potri.006G190100 [exp]	7.34	0.8036
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.002G099700 [exp]	7.74	0.8286
AT1G54150			E3 Ubiquitin ligase family pro...		Potri.003G065500 [exp]	8.06	0.8278
AT1G51940			protein kinase family protein ...		Potri.008G187500 [exp]	9.00	0.8293
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Potri.005G026700 [exp]	17.23	0.8026
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Potri.010G034500 [exp]	18.97	0.8001
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.017G031700 [exp]	21.63	0.8144
AT3G14470			NB-ARC domain-containing disea...		Potri.011G005900 [exp]	22.75	0.8123

Compare expression of checked genes

Potri.001G050100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.