Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33120 365 / 3e-130 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT1G04750 364 / 8e-130 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT1G04760 364 / 2e-129 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT2G32670 363 / 2e-128 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT4G15780 300 / 3e-104 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT2G33110 285 / 1e-98 ATVAMP723 vesicle-associated membrane protein 723 (.1) AT3G54300 266 / 1e-90 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT5G11150 152 / 7e-46 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT4G32150 149 / 9e-45 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT5G22360 145 / 2e-43 ATVAMP714 vesicle-associated membrane protein 714 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G177700 [exp] 391 / 2e-140 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.015G118300 [exp] 343 / 3e-121 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.002G240900 [exp] 342 / 5e-121 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.012G119600 [exp] 338 / 1e-119 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.008G209100 [exp] 292 / 3e-101 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.008G019400 [exp] 264 / 7e-90 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.010G239900 [exp] 259 / 6e-88 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.018G025800 [exp] 150 / 3e-45 AT4G32150 366 / 2e-130 vesicle-associated membrane protein 711 (.1) Potri.009G018900 [exp] 148 / 1e-44 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011870 [exp] 367 / 8e-131 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 362 / 8e-129 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 362 / 9e-129 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 358 / 3e-127 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 345 / 8e-122 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 342 / 8e-121 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 342 / 9e-121 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 341 / 2e-120 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10000754 [exp] 340 / 5e-120 AT1G04760 372 / 8e-133 vesicle-associated membrane protein 726 (.1) Lus10011737 [exp] 294 / 3e-102 AT1G04760 324 / 4e-114 vesicle-associated membrane protein 726 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [poplar] [flax] SNARE-fusion PF00957 [poplar] [flax] Synaptobrevin Synaptobrevin CL0431 [poplar] [flax] PF PF13774 [poplar] [flax] Longin Regulated-SNARE-like domain
Representative CDS sequence Show only first row Show all	>Potri.001G050400.3 pacid=42789718 polypeptide=Potri.001G050400.3.p locus=Potri.001G050400 ID=Potri.001G050400.3.v4.1 annot-version=v4.1 ATGGGGCAACAAACGTTGATCTATAGCTTTGTGGCAAGAGGAACGGTGCTTCTTGCGGAGTACACGGAGTTTAAAGGGAATTTCACAGGCATCGCTGCAC AATGTCTTGAAAAACTTCCCGCGTCTAATAATAAGTTTACTTATAATTGCGATGGCCATACCTTCAATTACCTCGTTGAAAACGGATTCACTTACTGCGT GGTTGCAGTTGAATCTGCTGGCAGACAAATTCCAATTGCCTTTTTGGAGCGAGTTAAGGAAGATTTTAACAAAAGATACAGTGGAGGAAAAGCAGCAACT GCTGTTGCCAAGAGCCTGAACGGAGAGTTTGGGTCCAAATTGAAGGGGCATATGCAGTATTGTGTGGATCATCCTGAAGAGATCAGCAAGCTTGCAAAAG TCAAGGCTCAGGTCTCTGAAGTTAAAGGTGTTATGATGGAAAACATTGAGAAGGTTCTTGATCGTGGTGACAAGATTGAGCTGCTGGTGGAGAAAACTGA GAACCTTCGCTCACAGGCACAAGATTTCCGACAACAGGGAACTAAGATGAGAAGAAAGATGTGGATTCAGAATATGAAGATAAAACTGATTGTTTTGGGT ATTATAATTGCCTTGATTCTCATCATAGTCTTATCTATTTGTCATGGATTCAATTGCTAA
AA sequence Show only first row Show all	>Potri.001G050400.3 pacid=42789718 polypeptide=Potri.001G050400.3.p locus=Potri.001G050400 ID=Potri.001G050400.3.v4.1 annot-version=v4.1 MGQQTLIYSFVARGTVLLAEYTEFKGNFTGIAAQCLEKLPASNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYSGGKAAT AVAKSLNGEFGSKLKGHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGDKIELLVEKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLG IIIALILIIVLSICHGFNC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.001G050400 [exp]	0	1
AT5G62700		atgcp3, TUB3	tubulin beta chain 3 (.1)		Potri.001G272700 [exp]	2.00	0.9457
AT3G05320			O-fucosyltransferase family pr...		Potri.012G118800 [exp]	2.23	0.9337
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.005G242000 [exp]	3.16	0.9251	Pt-RAC4.2
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Potri.001G372000 [exp]	3.46	0.9433	Pt-ZAC.1
AT1G29200			O-fucosyltransferase family pr...		Potri.011G068300 [exp]	6.00	0.9387
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.018G125284 [exp]	6.00	0.9293
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Potri.002G052800 [exp]	8.83	0.9137
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010800 [exp]	9.94	0.9066
AT1G27330			Ribosome associated membrane p...		Potri.006G017100 [exp]	10.24	0.9175
AT3G48140			B12D protein (.1)		Potri.012G074900 [exp]	10.95	0.8950

Compare expression of checked genes

Potri.001G050400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.