Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04770 382 / 5e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48850 365 / 1e-127 ATSDI1 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G51280 288 / 1e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20900 239 / 5e-76 TDM1, MS5 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44330 224 / 6e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G22794 98 / 4e-24 unknown protein AT1G49940 42 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G177600 [exp] 533 / 0 AT1G04770 384 / 8e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G240700 [exp] 416 / 1e-147 AT5G48850 404 / 9e-143 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G056500 [exp] 290 / 1e-95 AT3G51280 603 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G112100 [exp] 288 / 1e-94 AT3G51280 595 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G163500 [exp] 276 / 4e-88 AT4G20900 328 / 1e-105 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G465401 [exp] 274 / 8e-87 AT4G20900 337 / 1e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G033201 [exp] 54 / 3e-09 AT1G04770 53 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011738 [exp] 439 / 1e-156 AT1G04770 389 / 1e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000753 [exp] 437 / 8e-156 AT1G04770 391 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011872 [exp] 392 / 2e-138 AT5G48850 392 / 2e-138 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022806 [exp] 387 / 4e-129 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10028433 [exp] 287 / 2e-94 AT3G51280 569 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041887 [exp] 287 / 3e-94 AT3G51280 572 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041886 [exp] 286 / 5e-94 AT3G51280 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028434 [exp] 285 / 5e-94 AT3G51280 560 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023256 [exp] 252 / 3e-80 AT4G20900 330 / 4e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008852 [exp] 241 / 1e-75 AT4G20900 311 / 7e-101 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.001G050600.1 pacid=42789117 polypeptide=Potri.001G050600.1.p locus=Potri.001G050600 ID=Potri.001G050600.1.v4.1 annot-version=v4.1 ATGACCCGTCAAAGAAAAGAATCAGAAGCTCCATATCATCATGTAATTCATAAACTTCCTCCTCCTGGGGATAGCCCTTATGTTAGAGCCAAGCATGCTC AGCTAGTTGAGAAGGATCCTGAAGCAGCAATAGCTTTGTTTTGGAAGGCGATAAATGCCGGAGACAGGGTCGATAGTGCTCTCAAAGACATGGCAGTGGT TATGAAACAGCAAGACAGGGCAGAGGAAGCTATTGAAGCTGTGAAGGCCTTTAGAGACCGCTGCTCGAAGCAAGCCCAAGAATCTCTAGATAACGTCCTC ATTGACTTGTACAAGAAATGTGGAAAAATTGAGGAGCAGATAGATCTACTGAAACAGAAACTTAAGATGATTCACCAAGGAGAGGCCTTCAACAGGAAGG CTACCAAGACAGCGCGGTCACACGGGAGGAAGTTCCAGGTTACTGTCAAACAAGAGACTAGTCGGATACTGGGAAACTTGGGTTGGGCATATATGCAGCG AGGAAACTATATGGCAGCAGAAGCTGTATACCACAAAGCTCAGTCTTTTGATCCTGATGCTAACAAGGCCTGCAACTTGTGCTTGTGCTTAATCAAGCAA ACACGATATGCTGAGGCAAAATCAGTTATCGATGACATATTGCAGGGTAAGCTTTTAGGATCTGATGAGCCCAAGTCAAGAAACCGCGCCCAGGAGCTGC TACGTGAACTAGAGACATGCCAATCCTCATCGATGTTTTCAGAACCATCAGGATTAAGTTTAGAAGATGCTTTTGTTGAGGGTCTTGACCAGTTGATGAG TCAATGGACTCCATATAGATCAAGAAGACTGCCCATATTTGAAGAGATCTCGCCATTCATGGATCAGTTAGCCTGTTGA
AA sequence Show only first row Show all	>Potri.001G050600.1 pacid=42789117 polypeptide=Potri.001G050600.1.p locus=Potri.001G050600 ID=Potri.001G050600.1.v4.1 annot-version=v4.1 MTRQRKESEAPYHHVIHKLPPPGDSPYVRAKHAQLVEKDPEAAIALFWKAINAGDRVDSALKDMAVVMKQQDRAEEAIEAVKAFRDRCSKQAQESLDNVL IDLYKKCGKIEEQIDLLKQKLKMIHQGEAFNRKATKTARSHGRKFQVTVKQETSRILGNLGWAYMQRGNYMAAEAVYHKAQSFDPDANKACNLCLCLIKQ TRYAEAKSVIDDILQGKLLGSDEPKSRNRAQELLRELETCQSSSMFSEPSGLSLEDAFVEGLDQLMSQWTPYRSRRLPIFEEISPFMDQLAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04770			Tetratricopeptide repeat (TPR)...		Potri.001G050600 [exp]	0	1
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Potri.013G080200 [exp]	4.89	0.8153
					Potri.003G084300 [exp]	6.92	0.7766
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.017G068748 [exp]	10.48	0.7337
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.009G107600 [exp]	10.81	0.7464	2OGox7
AT1G66260			RNA-binding (RRM/RBD/RNP motif...		Potri.017G129900 [exp]	15.00	0.6873
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Potri.006G086000 [exp]	16.12	0.7359
AT1G21150			Mitochondrial transcription te...		Potri.001G035600 [exp]	17.32	0.7608
AT1G11240			unknown protein		Potri.011G043400 [exp]	19.89	0.7505
AT3G15750			Essential protein Yae1, N-term...		Potri.001G024000 [exp]	22.84	0.7606
AT3G58090			Disease resistance-responsive ...		Potri.006G216000 [exp]	25.00	0.7301

Compare expression of checked genes

Potri.001G050600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.