Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24190 1232 / 0 Protein kinase superfamily protein (.1) AT1G79600 405 / 2e-130 Protein kinase superfamily protein (.1) AT1G71810 377 / 1e-119 Protein kinase superfamily protein (.1) AT4G31390 333 / 2e-103 Protein kinase superfamily protein (.1.2) AT5G24970 323 / 8e-99 Protein kinase superfamily protein (.1.2) AT2G39190 281 / 1e-82 ATATH8 Protein kinase superfamily protein (.1.2) AT3G07700 214 / 2e-59 Protein kinase superfamily protein (.1.2.3) AT5G64940 200 / 4e-54 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT5G05200 134 / 5e-33 Protein kinase superfamily protein (.1) AT4G24810 122 / 3e-29 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061000 [exp] 387 / 5e-123 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.002G000100 [exp] 381 / 2e-121 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.006G275600 [exp] 328 / 1e-101 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G014000 [exp] 314 / 7e-96 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 273 / 1e-79 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G168600 [exp] 216 / 6e-60 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G083200 [exp] 206 / 4e-56 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.007G082500 [exp] 202 / 1e-54 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.019G061300 [exp] 135 / 3e-33 AT5G05200 830 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032616 [exp] 1192 / 0 AT3G23940 1162 / 0.0 dehydratase family (.1.2) Lus10043132 [exp] 1191 / 0 AT3G23940 1148 / 0.0 dehydratase family (.1.2) Lus10035701 [exp] 402 / 6e-129 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10017924 [exp] 374 / 2e-118 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10020152 [exp] 312 / 4e-95 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020103 [exp] 310 / 6e-94 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036522 [exp] 283 / 3e-83 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037291 [exp] 253 / 3e-73 AT1G79600 759 / 0.0 Protein kinase superfamily protein (.1) Lus10026952 [exp] 260 / 7e-73 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041406 [exp] 254 / 8e-73 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF03109 [poplar] [flax] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Potri.001G050700.5 pacid=42793166 polypeptide=Potri.001G050700.5.p locus=Potri.001G050700 ID=Potri.001G050700.5.v4.1 annot-version=v4.1 ATGGACGCAGCGGCTCCACAGCTCGTTTACGGCGGAATCCAGCCACGCCGCCGCCACTACAACTTACCAAATAGAATTCCGGTTCGAAGACCATCCAACC GGGTGTTTGCTGTTGCCACCGAGCCGAAACCGACACAAACCGGATCTATTGAATCGCCATCGCCATCATCCTCTTCTCCAAACACAGTTAATGGCTCATC CAAGTCCCCTCCGCCTAAACCTGTCAACGGCGTTGCCACTAAATTCTCAAAGTCAAAACCTGTCAACGGTGTCTCTACAAGGATGGGAGAAGTGTCGCAG GAAATAAAAAGAGTGAGGGCACAAATGGAAGAAAATGAAGAGTTGGCAATACTAATGAGAGGACTTCGAGGTCAAAATTTAAGAGATACTCAGTTTGCTG ATGACAATATCAAGCTTCGTCTGGTTGAGGTAGATGAAAGCAGTGAGTTTTTGCCTTTGGTGTATGAACCTTCTAGCATCTCTGCTTACTGGGGAAAACG ACCACGTGCAGTTGCAACTCGAGCTGTCCAGTTACTTTCTGTTGCCGGGGGTTTTCTCTCTCGTCTTGCTTGGGATGTGATAAACAAGAAAGTCAAGGAG AATGAAGTTGCTAGAGCAATTGAATTGAGGGAAATTGTAACCTCTTTGGGTCCAGCATATGTAAAACTTGGTCAAGCATTGAGTATTCGACCAGATATAT TGTCACCTGCTGCAATGATCGAGCTACAAAAACTTTGTGATAAGGTTCCTTCATTTCCAGATGATGTGGCAATGGCTCTTATAAATGAGGAGCTTGGTCA GCCATGGCAGAACATCTATTCTGAACTTTCTTCGTCTCCAATAGCTGCTGCATCTCTTGGGCAGGTGTATAAGGGTCGGCTGAAAGAAAATGGAGACCTG GTGGCTGTTAAAGTACAGAGGCCTTTTGTTCTTGAGACAGTAACGGTCGATCTATTCATCATAAGGAATTTGGGTTTGGCTCTCCGAAAGTTCCCTCAGA TCTCTGTAGATGTAGTTGGGTTGGTTGATGAATGGGCTGCTCGTTTCTTTGAGGAGCTAGATTATATTAATGAAGGTGAAAATGGATCTCTGTTTGCTGA AATGATGAGAAAGGACCTTCCACAGGTTGTTGTGCCAAATACCTACGAGAAGTATACTTCAAGAAAAGTTCTTACCACAGAGTGGATCGAGGGAGAAAAG CTCTCACAAAGTACTGAAAGTGATGTTGGAGAACTTGTTAATGTTGGAGTCATATGCTACCTGAAGCAGCTACTTGATACTGGCCTTTTCCATGCTGACC CTCATCCTGGGAATTTGATCCGCACTCCAGATGGGAAGCTTGCCATACTTGATTTTGGGCTAGTCACAAAATTAACCGATGATCAAAAATATGGAATGAT CGAAGCAATTGCTCACCTTATCCATCGGGACTATGGAGCAATTGTCAAAGATTTTGTCAAACTTGGTTTCATTTCCGAGGGGGTTAATTTGGAACCTATC TTGCCAGTCCTGGCTAAGGTCTTTGATCAAGCACTTGAAGGTGGAGGAGCAAAAAACATAAACTTTCAGGAGCTAGCATCTGATCTGGCACAAATAACAT TTGACTATCCATTTAGGATACCCCCTTATTTTGCTCTCATCATTAGGGCAATAGGTGTACTGGAAGGCATAGCACTAGTTGGGAATCCTGATTTTGCTAT TGTAGACGAGGCCTATCCATATATCGCACAGAGGCTCCTCACTGACGAGTCCCCTCGTCTAAGGAATGCTTTACGCTACACAATTTATGGGAAATCTGGT GTTTTTGATGCTGAAAGATTCATTGATGTCATGCAAGCCTTTGAAAATTTCATCACTGCAGCAAAAAGTGGAGGTGGAGAGAGTATGAATGGGGATATGG CTGAACTTGGAATGCTGCAAAGCCAAACGGGTTATATCTTTCCTGGATTTCTCTCAAGTGCTTCTCAACCAACACAGCCAATTCAAACTAGGGCAGCCTT AGCATTCCTTCTTTCTGAGAAGGGGAACTTTTTCCGAGAATTTCTACTGGACGAGATTGTAAAGAGCATTGATGCTGTTGCAAGGGAACAACTGGTACAA ATTATGGCAATCCTTGGCGTGGGAAATGCTGCCCCAATTTTTAGCATGGTTCCTGCACCCTTTAAGCCCGCGGCACTTCTGCCAACGATAACTGAGGAGG ACAAAGTTATCTTGAATAATGTTCAGAAAGTTGCTGAATTCTTAACTGCAGGAACTTCAATATCGAGTACATCAACCCAGGGTGTAGATGTTACTCGGAT TGTACAAGAACTTCTTCCAGTTTTGCCAGGTATCTCAGTCACAATACTTCCTGAGGTGGTTAGTCGGCTTTCTTCTCGTATAGCAGCACGCATAATTCGA GATGTACTTTTGTAG
AA sequence Show only first row Show all	>Potri.001G050700.5 pacid=42793166 polypeptide=Potri.001G050700.5.p locus=Potri.001G050700 ID=Potri.001G050700.5.v4.1 annot-version=v4.1 MDAAAPQLVYGGIQPRRRHYNLPNRIPVRRPSNRVFAVATEPKPTQTGSIESPSPSSSSPNTVNGSSKSPPPKPVNGVATKFSKSKPVNGVSTRMGEVSQ EIKRVRAQMEENEELAILMRGLRGQNLRDTQFADDNIKLRLVEVDESSEFLPLVYEPSSISAYWGKRPRAVATRAVQLLSVAGGFLSRLAWDVINKKVKE NEVARAIELREIVTSLGPAYVKLGQALSIRPDILSPAAMIELQKLCDKVPSFPDDVAMALINEELGQPWQNIYSELSSSPIAAASLGQVYKGRLKENGDL VAVKVQRPFVLETVTVDLFIIRNLGLALRKFPQISVDVVGLVDEWAARFFEELDYINEGENGSLFAEMMRKDLPQVVVPNTYEKYTSRKVLTTEWIEGEK LSQSTESDVGELVNVGVICYLKQLLDTGLFHADPHPGNLIRTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYGAIVKDFVKLGFISEGVNLEPI LPVLAKVFDQALEGGGAKNINFQELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNPDFAIVDEAYPYIAQRLLTDESPRLRNALRYTIYGKSG VFDAERFIDVMQAFENFITAAKSGGGESMNGDMAELGMLQSQTGYIFPGFLSSASQPTQPIQTRAALAFLLSEKGNFFREFLLDEIVKSIDAVAREQLVQ IMAILGVGNAAPIFSMVPAPFKPAALLPTITEEDKVILNNVQKVAEFLTAGTSISSTSTQGVDVTRIVQELLPVLPGISVTILPEVVSRLSSRIAARIIR DVLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24190			Protein kinase superfamily pro...		Potri.001G050700 [exp]	0	1
AT5G38660		APE1	acclimation of photosynthesis ...		Potri.004G102100 [exp]	1.00	0.9771
AT5G19850			alpha/beta-Hydrolases superfam...		Potri.003G219700 [exp]	2.44	0.9678
AT1G16720		HCF173	high chlorophyll fluorescence ...		Potri.007G003500 [exp]	2.82	0.9644
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Potri.016G116400 [exp]	3.00	0.9664	Pt-PDX1.2
AT5G50100			Putative thiol-disulphide oxid...		Potri.015G072000 [exp]	4.47	0.9483
AT5G35970			P-loop containing nucleoside t...		Potri.013G073900 [exp]	4.89	0.9561
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Potri.009G151400 [exp]	6.63	0.9477	ATMGT10.1
AT4G28740			unknown protein		Potri.014G194500 [exp]	6.70	0.9643
AT1G22850			SNARE associated Golgi protein...		Potri.013G099600 [exp]	12.40	0.9542
AT5G02540			NAD(P)-binding Rossmann-fold s...		Potri.006G083900 [exp]	14.83	0.9349

Compare expression of checked genes

Potri.001G050700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.