Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26594 78 / 3e-18 ARR24 response regulator 24 (.1) AT3G04280 76 / 2e-17 ARR22 response regulator 22 (.1.2.3) AT2G47430 49 / 1e-06 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G01830 43 / 7e-05 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G35750 42 / 0.0002 AHK2 histidine kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G177300 [exp] 216 / 3e-71 AT3G04280 96 / 8e-25 response regulator 22 (.1.2.3) Potri.003G172800 [exp] 213 / 2e-67 AT3G04280 76 / 2e-16 response regulator 22 (.1.2.3) Potri.003G177400 [exp] 206 / 4e-67 AT3G04280 99 / 9e-26 response regulator 22 (.1.2.3) Potri.003G172866 [exp] 199 / 1e-61 AT3G04280 85 / 2e-19 response regulator 22 (.1.2.3) Potri.001G051000 [exp] 157 / 9e-47 AT5G26594 82 / 7e-19 response regulator 24 (.1) Potri.001G050900 [exp] 147 / 3e-43 AT3G04280 83 / 4e-19 response regulator 22 (.1.2.3) Potri.003G172750 [exp] 99 / 8e-27 AT3G04280 80 / 1e-20 response regulator 22 (.1.2.3) Potri.003G172701 [exp] 103 / 9e-27 AT4G29790 53 / 1e-07 unknown protein Potri.019G024900 [exp] 100 / 9e-27 AT5G26594 121 / 2e-36 response regulator 24 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004775 [exp] 88 / 2e-22 AT5G26594 98 / 2e-27 response regulator 24 (.1) Lus10028021 [exp] 61 / 7e-12 AT5G26594 99 / 3e-27 response regulator 24 (.1) Lus10005407 [exp] 61 / 1e-11 AT5G26594 135 / 2e-41 response regulator 24 (.1) Lus10030772 [exp] 53 / 5e-08 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10028992 [exp] 53 / 6e-08 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10003686 [exp] 51 / 2e-07 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10013250 [exp] 50 / 3e-07 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10031600 [exp] 48 / 2e-06 AT2G47430 624 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10037032 [exp] 47 / 3e-06 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10015773 [exp] 47 / 6e-06 AT1G27320 1395 / 0.0 histidine kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Potri.001G050800.1 pacid=42789421 polypeptide=Potri.001G050800.1.p locus=Potri.001G050800 ID=Potri.001G050800.1.v4.1 annot-version=v4.1 ATGGCTGAACAAGATAACACTCAAATTGATGGAGAGATTCAGAATCTTGTTAACAAACTGGATAAGTGCATTGCAAACTTTGATGGAAAGAGGCAAGTTT TCGATAATGCAATTGGGGAAAAGATCCAATCACTGAAAAAAGATCGAGGTGAAGCCAGGGAACTGAGGTTGAGTCTTCATCAAGAATCTGGTGATACAAG GAGCAAGAAGATTGATGTTGTGAATCAATGGCTGAATCAGAAGGCACTGATCAGTGGTGACCCAGATTACTGTGATTTATCTGTGCTTATTGTTGATGAT GATCGTGCTGTTCGAGACAGCATTCGGAGAGCGATGATGTCATATGGGGCACAGAAGCAGTTTATAATAGATGTTCAAGAGGCCAAGAATGGAAGAGAAG CTGTTTATCTTCATCTTGGTGGAGCTTCTTTTGATATTATTCTTATGGACAGTCAAATGCCCGTCATGAAGGGACATGAGGCAGTAAAGAAGTTGCGTCA GATGGGTGTTAAGAGCCGGATCATCGGTGTCAGTTATCAATTTGAGAAACCAGCTTTCAGGGGCTCAAGCATAAACAAGTGGATTAAAAAGCCATTGAAT CTTGAAAAGATCGCTGCTATCTTTTGTTAA
AA sequence Show only first row Show all	>Potri.001G050800.1 pacid=42789421 polypeptide=Potri.001G050800.1.p locus=Potri.001G050800 ID=Potri.001G050800.1.v4.1 annot-version=v4.1 MAEQDNTQIDGEIQNLVNKLDKCIANFDGKRQVFDNAIGEKIQSLKKDRGEARELRLSLHQESGDTRSKKIDVVNQWLNQKALISGDPDYCDLSVLIVDD DRAVRDSIRRAMMSYGAQKQFIIDVQEAKNGREAVYLHLGGASFDIILMDSQMPVMKGHEAVKKLRQMGVKSRIIGVSYQFEKPAFRGSSINKWIKKPLN LEKIAAIFC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26594		ARR24	response regulator 24 (.1)		Potri.001G050800 [exp]	0	1
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Potri.006G110500 [exp]	2.00	0.8711
AT3G05520			Subunits of heterodimeric acti...		Potri.005G025300 [exp]	8.60	0.8325
AT1G22840		CYTC-1, ATCYTC-...	CYTOCHROME C-A, CYTOCHROME C-1...		Potri.019G076101 [exp]	14.07	0.8160
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.005G251400 [exp]	15.09	0.7998	Pt-CYCB2.2
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	18.70	0.7963
AT1G49960			Xanthine/uracil permease famil...		Potri.001G292600 [exp]	20.61	0.8022
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Potri.011G165100 [exp]	31.74	0.7866
AT1G20720			RAD3-like DNA-binding helicase...		Potri.002G008700 [exp]	33.63	0.7528
AT3G47610			transcription regulators;zinc ...		Potri.003G168100 [exp]	36.05	0.7627
AT5G62580			ARM repeat superfamily protein...		Potri.012G074400 [exp]	38.89	0.7706

Compare expression of checked genes

Potri.001G050800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.