Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04280 82 / 4e-19 ARR22 response regulator 22 (.1.2.3) AT5G26594 79 / 1e-17 ARR24 response regulator 24 (.1) AT2G01830 45 / 5e-05 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G051000 [exp] 230 / 2e-73 AT5G26594 82 / 7e-19 response regulator 24 (.1) Potri.003G177300 [exp] 156 / 3e-46 AT3G04280 96 / 8e-25 response regulator 22 (.1.2.3) Potri.003G177400 [exp] 156 / 6e-46 AT3G04280 99 / 9e-26 response regulator 22 (.1.2.3) Potri.001G050800 [exp] 148 / 4e-43 AT5G26594 77 / 4e-18 response regulator 24 (.1) Potri.003G172800 [exp] 147 / 2e-40 AT3G04280 76 / 2e-16 response regulator 22 (.1.2.3) Potri.003G172866 [exp] 136 / 5e-36 AT3G04280 85 / 2e-19 response regulator 22 (.1.2.3) Potri.003G172750 [exp] 100 / 5e-26 AT3G04280 80 / 1e-20 response regulator 22 (.1.2.3) Potri.019G024900 [exp] 99 / 2e-25 AT5G26594 121 / 2e-36 response regulator 24 (.1) Potri.002G253000 [exp] 99 / 4e-25 AT5G26594 171 / 5e-56 response regulator 24 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005407 [exp] 78 / 2e-17 AT5G26594 135 / 2e-41 response regulator 24 (.1) Lus10004775 [exp] 74 / 5e-16 AT5G26594 98 / 2e-27 response regulator 24 (.1) Lus10028021 [exp] 70 / 2e-14 AT5G26594 99 / 3e-27 response regulator 24 (.1) Lus10029849 [exp] 47 / 2e-05 AT2G47430 489 / 2e-153 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10028992 [exp] 45 / 0.0001 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10003686 [exp] 43 / 0.0003 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Potri.001G050900.1 pacid=42790920 polypeptide=Potri.001G050900.1.p locus=Potri.001G050900 ID=Potri.001G050900.1.v4.1 annot-version=v4.1 ATGCTGGAAAAACCACCAAGAACATCAATGACAAGTCAAGATAACACTCAAATTAATCTTGAAATCAAGACTTTACTCGTGCAACTGAACGGCAGGGTCA CAAATTTAATAAAAAAGATCACTTCTGCCGAGTCCTTCAAGGCAGAAATTGAAGCTTTAGTGAATGAAGCAAGGAAATCTCATCATTCTAGCACTGCAAG AAGAAACCATCTTGATAAGGCAAGGCAATTGCTGATGCAAAAGATTGATGAATTCAAGAAAGAAGAAGATACCGAGGATAGAGGACTCACAAAGACTGAT GCAATGGGGGCTCCTTCCGATCTTACAGGAAACCGTGTGTCAATGGTTCAGAAAGATCACAAGCAAACTCAGATTCTAGCTACAGAAGTGGATCGGTACA TTGCAGAGATTGATCGGAAGGTGAATGTATTAGAGGATCCATCCTACCTGACGGAAGAAATCAGAGCCCTGAATGTAGATCGAGTGAGAGCCGAGTCTTT AAAACTTTTTCTTCAATCTAGTGATAGAAAGAAGGATCTTGAAGTAAGACGAAGGATTGCTTACGTGAATCAATGGCTGAATCATAAGACGGAGAGCCAT AAAAGTGGAGACTCAAGCATCAAATACTGTGTGCTTGTTGTCGATGATAACTGTGAAGATCGAGAAAGCCTTCGCGAACTCCTCATGTCGTTTAAGTCAC AAACGACGCCTACAATGGATGTTCAAGTGGCAAAAAATGGAAAAGAAGCTGTTTATCTTCATCTTGCTGGGGCTTCCTTTGATATGATTGTTATGGACGA TTTAATGCCCGTCATGAATGGAATTGAGGCAACGAAGCAGCTATTCGGCATGGGTGTTATCAGCTTCATTGTTGGTGTCGGTGATGACACCGTGAAACAA GCATTTATTGATGCGGGCATAGACCAATACATAGAAAAGCCTCTGACTCCTGCGAAGGTCGCTGATCTCTTCCCTGATCTCAGCGACTCATACTTCGACC TTTAA
AA sequence Show only first row Show all	>Potri.001G050900.1 pacid=42790920 polypeptide=Potri.001G050900.1.p locus=Potri.001G050900 ID=Potri.001G050900.1.v4.1 annot-version=v4.1 MLEKPPRTSMTSQDNTQINLEIKTLLVQLNGRVTNLIKKITSAESFKAEIEALVNEARKSHHSSTARRNHLDKARQLLMQKIDEFKKEEDTEDRGLTKTD AMGAPSDLTGNRVSMVQKDHKQTQILATEVDRYIAEIDRKVNVLEDPSYLTEEIRALNVDRVRAESLKLFLQSSDRKKDLEVRRRIAYVNQWLNHKTESH KSGDSSIKYCVLVVDDNCEDRESLRELLMSFKSQTTPTMDVQVAKNGKEAVYLHLAGASFDMIVMDDLMPVMNGIEATKQLFGMGVISFIVGVGDDTVKQ AFIDAGIDQYIEKPLTPAKVADLFPDLSDSYFDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.001G050900 [exp]	0	1
AT5G10050			NAD(P)-binding Rossmann-fold s...		Potri.007G086600 [exp]	1.41	0.8313
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Potri.001G259200 [exp]	18.33	0.8144
AT3G48880			RNI-like superfamily protein (...		Potri.012G106700 [exp]	23.66	0.7919
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.019G025200 [exp]	24.00	0.7997
AT5G62930			SGNH hydrolase-type esterase s...		Potri.012G081900 [exp]	24.00	0.7928
AT5G61580		PFK4	phosphofructokinase 4 (.1.2)		Potri.001G079501 [exp]	27.22	0.7625
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.014G015600 [exp]	29.39	0.7958
AT5G56110	MYB	MS188, ATMYB80,...	MALE STERILE 188, ARABIDOPSIS ...		Potri.001G470500 [exp]	33.25	0.7357
AT1G18340			basal transcription factor com...		Potri.005G176600 [exp]	37.34	0.7682
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.016G033200 [exp]	37.84	0.7974

Compare expression of checked genes

Potri.001G050900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.