Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24200 664 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT1G24340 45 / 0.0001 EMB260, EMB2421 EMBRYO DEFECTIVE 260, EMBRYO DEFECTIVE 2421, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G044300 [exp] 47 / 4e-05 AT5G67030 919 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.005G138400 [exp] 45 / 0.0001 AT5G67030 925 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.008G178400 [exp] 43 / 0.0007 AT1G24340 967 / 0.0 EMBRYO DEFECTIVE 260, EMBRYO DEFECTIVE 2421, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011742 [exp] 746 / 0 AT3G24200 653 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Lus10000752 [exp] 731 / 0 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10011740 [exp] 116 / 4e-31 AT3G24200 96 / 2e-24 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Lus10019342 [exp] 45 / 0.0001 AT5G67030 852 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Lus10009359 [exp] 45 / 0.0002 AT5G67030 888 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Lus10011372 [exp] 43 / 0.0006 AT1G24340 909 / 0.0 EMBRYO DEFECTIVE 260, EMBRYO DEFECTIVE 2421, FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01494 [poplar] [flax] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G051200.1 pacid=42793508 polypeptide=Potri.001G051200.1.p locus=Potri.001G051200 ID=Potri.001G051200.1.v4.1 annot-version=v4.1 ATGAACAGGGTGATTGCAAGGAAAGTTGTTCCTGCTAATAATCAAATATTCAAACTTTCAAGGAAGAAATTTTTCAGTGATGAAGCTGCAAAAGCATCTA CTTCTGCTGCTTCTTCCCAATCTAATCAGGAGAGTGATGGCAACCTGAGTTTTACTGGCAATGTTCAGCCATATGACATTGCTATTGTTGGGGGAGGCAT GGTTGGCATGGCCCTAGCTTGTTCCTTGGCAACCACGCCATTGACGAAGCATCTGAGTGTTGCCATCATTGATAGCAGTCCTGCTTTGGCCAATAAACCA TGCATAAAGAGAGAAGACCCACCTGATCCAAGGGTCAGTACAGTCACACCTGCAACTATATCTTTTTTCAAAGATACTGGTGCCTGGCAATATGTTCAAC AACATCGACATGCTTATTTTGATAAGATGCAGGTTTGGGATTACACTGGCTTAGGATATACAAAATATGATGCAAGAGATGTAGACAAAGAAGTTTTAGG GTGTGTGGTGGAGAATAAGGTGCTCCACAGTTCTCTGTTATCACGAATTGAGGACACAGATTTCCAAAAGAAAATATACCATTCTAGATTAACTTCAATG TCTCTAAATCCAAGCTCGTCATCCATAGTGGTGGACAGTACAGCCTCAACAGAAGCATCATATGCCAGGGGACGTTTAGCGAAGCTGGAACTTAGTGATG GCAACAGCCTGTATGCAAAGTTGGTGGTTGGATCTGATGGTGGGAAGTCACAAGTCCGGGAGCTTGCAGGATTTAAAACAACTGGGTGGAAATACTCGCA GAATGCGGTAATATGCACTGTAGAACATTCAGTAGAAAATTATAGTGCATGGCAGCGGTTTCTACCAGCAGGTCCAATTGCACTTCTGCCAATTGGAGAC AAATTCAGCAATATTGTTTGGACCATGAACCCAGAGGAGTCATCTGATTTTAAATCAATGAAAGAGGATGATTTTGTGAAAGCTGTAAATCATGCTCTGG ATTATGGATATGGTCCTCATCATAAGTCAAGTCTACCGGGTAGTGCAGGCATGTTTTCATGGCTCGGAGGAAATGTGACAATATTTGCTAATGAGTCTTT TGAAATTCCACCAAAAGTGGTCAAGTTGGCATCTGAGAGGATGGCATTTCCATTGTCTTTAATGCATGCAAATGAATATGCATCAAAGCGTGTTGTTCTG ATTGGTGATGCAGCACACACAGTTCATCCTTTAGCTGGCCAGGGAGTTAATTTGGGTTTTGGAGATGCATTTGCTCTTTCAAGAATCATTGCTGAAGGAA TTGCTGTGGGCATGGACATTGGGGAGGTATCGTTGTTGAAAAAATATGAAGCAGAGAGAAAACTGGCAAACATGACTATGATGGCTATTCTAGATGGCTT TCAGAAGGCATACTCCGTTGATTTTGGCCCTCTAAATATACTACGTGCTGCAGCATTTCATGGGGCACACTTTATTTCGCCACTCAAGAGGAGTATCATT TCGTATGCCTCGGGAGAGCAAAGACTACCACTTTTTTCTTGA
AA sequence Show only first row Show all	>Potri.001G051200.1 pacid=42793508 polypeptide=Potri.001G051200.1.p locus=Potri.001G051200 ID=Potri.001G051200.1.v4.1 annot-version=v4.1 MNRVIARKVVPANNQIFKLSRKKFFSDEAAKASTSAASSQSNQESDGNLSFTGNVQPYDIAIVGGGMVGMALACSLATTPLTKHLSVAIIDSSPALANKP CIKREDPPDPRVSTVTPATISFFKDTGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYDARDVDKEVLGCVVENKVLHSSLLSRIEDTDFQKKIYHSRLTSM SLNPSSSSIVVDSTASTEASYARGRLAKLELSDGNSLYAKLVVGSDGGKSQVRELAGFKTTGWKYSQNAVICTVEHSVENYSAWQRFLPAGPIALLPIGD KFSNIVWTMNPEESSDFKSMKEDDFVKAVNHALDYGYGPHHKSSLPGSAGMFSWLGGNVTIFANESFEIPPKVVKLASERMAFPLSLMHANEYASKRVVL IGDAAHTVHPLAGQGVNLGFGDAFALSRIIAEGIAVGMDIGEVSLLKKYEAERKLANMTMMAILDGFQKAYSVDFGPLNILRAAAFHGAHFISPLKRSII SYASGEQRLPLFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Potri.001G051200 [exp]	0	1
AT3G05700			Drought-responsive family prot...		Potri.005G020900 [exp]	2.64	0.7555
AT2G17020			F-box/RNI-like superfamily pro...		Potri.009G139500 [exp]	5.19	0.7008
AT5G54540			Uncharacterised conserved prot...		Potri.011G130000 [exp]	6.63	0.6945
AT4G19150			Ankyrin repeat family protein ...		Potri.001G130500 [exp]	7.93	0.6815
AT1G72820			Mitochondrial substrate carrie...		Potri.006G223600 [exp]	8.36	0.6754
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.009G106900 [exp]	8.48	0.6757	OST1.1
AT1G71080			RNA polymerase II transcriptio...		Potri.008G127900 [exp]	9.38	0.6813
AT5G04250			Cysteine proteinases superfami...		Potri.008G036700 [exp]	14.28	0.6831
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.013G161500 [exp]	17.32	0.6455
AT1G67910			unknown protein		Potri.008G186200 [exp]	18.02	0.6881

Compare expression of checked genes

Potri.001G051200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.