Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04780 904 / 0 Ankyrin repeat family protein (.1) AT3G24210 747 / 0 Ankyrin repeat family protein (.1) AT3G04470 643 / 0 Ankyrin repeat family protein (.1) AT1G62050 449 / 2e-150 Ankyrin repeat family protein (.1) AT1G11740 318 / 1e-99 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G177000 [exp] 1186 / 0 AT1G04780 862 / 0.0 Ankyrin repeat family protein (.1) Potri.019G019700 [exp] 678 / 0 AT3G04470 883 / 0.0 Ankyrin repeat family protein (.1) Potri.013G047500 [exp] 677 / 0 AT3G04470 881 / 0.0 Ankyrin repeat family protein (.1) Potri.004G013500 [exp] 453 / 3e-152 AT1G62050 558 / 0.0 Ankyrin repeat family protein (.1) Potri.011G004500 [exp] 327 / 8e-104 AT1G62050 588 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000752 [exp] 1001 / 0 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10011743 [exp] 997 / 0 AT1G04780 852 / 0.0 Ankyrin repeat family protein (.1) Lus10008195 [exp] 653 / 0 AT3G04470 878 / 0.0 Ankyrin repeat family protein (.1) Lus10029612 [exp] 627 / 0 AT3G04470 857 / 0.0 Ankyrin repeat family protein (.1) Lus10032775 [exp] 364 / 1e-117 AT3G04470 698 / 0.0 Ankyrin repeat family protein (.1) Lus10027961 [exp] 317 / 3e-104 AT3G04470 409 / 3e-141 Ankyrin repeat family protein (.1) Lus10002942 [exp] 324 / 1e-102 AT1G62050 707 / 0.0 Ankyrin repeat family protein (.1) Lus10027960 [exp] 307 / 3e-98 AT3G04470 412 / 3e-139 Ankyrin repeat family protein (.1) Lus10003524 [exp] 220 / 9e-65 AT1G62050 531 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11904 [poplar] [flax] GPCR_chapero_1 GPCR-chaperone
Representative CDS sequence Show only first row Show all	>Potri.001G051400.4 pacid=42789938 polypeptide=Potri.001G051400.4.p locus=Potri.001G051400 ID=Potri.001G051400.4.v4.1 annot-version=v4.1 ATGGCGGGCATTGACATTTCTAAATATGCCCATAGTCCTGTGCATAAGGCCATTGCAGCCAAAGATTATGCCACTCTCAGGAAGATATTAGCTGGCCTTC CCCGTCTTTGCAATCCTGCTGAGATTCGGAATGAGGCGATTTCATTGGCTGAGGAAGAGAAGGCTGATGCTATTGCTACTGCAATTGATAGGCGTGATGT ACCGAACCGTGACACCCCTCTTCACTTGGCTGTCAAACTGGGTGATGAGACTGCAACCGAGATGCTTATGGTTGCTGGTGCAGATTGGAGTTTGCAGAAT GAGCAGGGATGGAGCGCACTCCAAGAAGCTATCTGCAATAGAGAAGAAGGGACTGCAATGATTATTGTCAGGCATTACCAGCCATTGGCATGGGCAAAGT GGTGTAGGAGGTTGCCTCGTTTGGTGGGAACAATGCGAAGGATGAGGGATTTCTACATGGAAATAACATTCCATTTTGAGAGTTCTGTGATACCTTTTAT CTCAAGGATTGCTCCTTCAGATACTTACAAAATCTGGAAGAGGGGTGCAAATTTGAGGGCAGATATGACTTTGGCTGGTTTTGATGGTTTTAGGATCCAG CGTTCAGATCAGAGTATTCTTTTCCTTGGTGATGGATCGGAGGACGGGAAAGTCCCTTCTGGGTCGCTTTGCATGATTACTCACAAGGATAAAGAGGTGA TGAATGCTTTGGATGGTGCTGGTTCTCTGGCAACTGATGAAGAGGTTCGGCAAGAAGTGGCTGCAATGTCTCAGACTAATATATTCAGGCCAGGGATAGA TGTGACCCAAGCAGTTCTTTTGCCACAGCTGACATGGAGGCGGCAGGAGAAAACAGAAATGGTGGGTTCATGGAAGGCAAAGGTCTATGACATGCACAAT GTGGTTGTTAGCATCAAATCTAGAAAGGTCCCAGGGGCTATGTCGGACGATGAGTTCTTCTCATCCTGCAATGATAATGAAACAGAAAGTGAGGAGCTCA ATGACATTTTGACAGAAGAAGAAAGAAGGCAACTTGAAGTTGCTCTTAAATTGGAGACGTCAGAGCTGAGCTCTGAAAATGGCGATGGGATTATCGCACA TCGTCATAGTTGTTATGAGCCCAGGGAGGTTCCTATTGAAGATGCAAATGGTTGTAGAAATGGAGAGACTAAGCAGGAAAAGAAAGGGTGGTTTGGTGGT TGGAGGAAACGGGATTCTAAAGTTGAAGGGCAGAAGAAAATTGTTCCACCAAGAAGTTCTCTTTGTGTGGATGAGAAGGTGAGTGATTTACTAGGGGACT CTCCATCCACAAGTCAGCCTAAACCAGGAAGACATTCTGTGGAGATTGTTTTGAGGGATGAACACCGGAAAGGGAGAGATAGCAGGGCATCTACTTCTGT GAGTTCTGAGAGCAATAATCGTCGCAAGGAAGGAGGCCGTGAGAATGAGTATAAGAAAGGACTAAGACCTACTCTTTGGCTTTCTCCAAACTTCCCGTTG CAAACTGAAGAACTTCTTCCACTGCTTGACATTCTTGCAAACAAGGTTAAGGCAATTCGTCGCTTAAGAGAGCTGCTCACAACTAAACTTCCTATGGGAA CCTTTCCAGTTAAGGTTGCTATCCCAGTAGTTCCCACAATCAGGGTACTGGTTACATTTACGAAGTTTGAAGAACTACAGCCATTGGATGAATTTGCAAC ACCCCCTTCAAGTCCTACAGCTGCATTACGAGAAAGTCCGATGGTTATGCAGTCCTCAACTTCATCTTGGTTTCAGTGGATAAAAGCCCCTTATCAACGC CCTAGCTTGTCTGCTGGTGGCTCTAGCAGTAGGATAGAAAACATTCAGGACCCATTTGCTATTCCTCCAGATTATACTTGGGTTACAGCTGAAGCAAAGA AGAAGAAGATGCAGGAAAAGAACAAATCAAAGAAAGCAAGAAATCATGGTCATTAA
AA sequence Show only first row Show all	>Potri.001G051400.4 pacid=42789938 polypeptide=Potri.001G051400.4.p locus=Potri.001G051400 ID=Potri.001G051400.4.v4.1 annot-version=v4.1 MAGIDISKYAHSPVHKAIAAKDYATLRKILAGLPRLCNPAEIRNEAISLAEEEKADAIATAIDRRDVPNRDTPLHLAVKLGDETATEMLMVAGADWSLQN EQGWSALQEAICNREEGTAMIIVRHYQPLAWAKWCRRLPRLVGTMRRMRDFYMEITFHFESSVIPFISRIAPSDTYKIWKRGANLRADMTLAGFDGFRIQ RSDQSILFLGDGSEDGKVPSGSLCMITHKDKEVMNALDGAGSLATDEEVRQEVAAMSQTNIFRPGIDVTQAVLLPQLTWRRQEKTEMVGSWKAKVYDMHN VVVSIKSRKVPGAMSDDEFFSSCNDNETESEELNDILTEEERRQLEVALKLETSELSSENGDGIIAHRHSCYEPREVPIEDANGCRNGETKQEKKGWFGG WRKRDSKVEGQKKIVPPRSSLCVDEKVSDLLGDSPSTSQPKPGRHSVEIVLRDEHRKGRDSRASTSVSSESNNRRKEGGRENEYKKGLRPTLWLSPNFPL QTEELLPLLDILANKVKAIRRLRELLTTKLPMGTFPVKVAIPVVPTIRVLVTFTKFEELQPLDEFATPPSSPTAALRESPMVMQSSTSSWFQWIKAPYQR PSLSAGGSSSRIENIQDPFAIPPDYTWVTAEAKKKKMQEKNKSKKARNHGH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04780			Ankyrin repeat family protein ...		Potri.001G051400 [exp]	0	1
AT5G53350		CLPX	CLP protease regulatory subuni...		Potri.015G012900 [exp]	14.93	0.8712
AT1G61040		VIP5	vernalization independence 5, ...		Potri.011G047900 [exp]	16.06	0.7951
					Potri.015G140800 [exp]	17.74	0.8624
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.017G079100 [exp]	18.97	0.8283
AT5G42310			Pentatricopeptide repeat (PPR-...		Potri.002G010900 [exp]	21.02	0.8680
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.010G210900 [exp]	28.63	0.8370
AT4G27290			S-locus lectin protein kinase ...		Potri.011G129350 [exp]	30.69	0.8428
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Potri.002G230000 [exp]	38.34	0.8434	Pt-GLUR3.3
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G028366 [exp]	48.16	0.8292
AT5G38260			Protein kinase superfamily pro...		Potri.010G121350 [exp]	55.38	0.8339

Compare expression of checked genes

Potri.001G051400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.