Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23940 960 / 0 dehydratase family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G176600 [exp] 1122 / 0 AT3G23940 1011 / 0.0 dehydratase family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033370 [exp] 1003 / 0 AT3G23940 1013 / 0.0 dehydratase family (.1.2) Lus10034822 [exp] 998 / 0 AT3G23940 1009 / 0.0 dehydratase family (.1.2) Lus10032616 [exp] 990 / 0 AT3G23940 1162 / 0.0 dehydratase family (.1.2) Lus10043132 [exp] 971 / 0 AT3G23940 1148 / 0.0 dehydratase family (.1.2) Lus10032617 [exp] 141 / 5e-40 AT3G23940 139 / 5e-40 dehydratase family (.1.2) Lus10043131 [exp] 125 / 3e-33 AT3G23940 139 / 6e-39 dehydratase family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00920 [poplar] [flax] ILVD_EDD Dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.001G051700.1 pacid=42791559 polypeptide=Potri.001G051700.1.p locus=Potri.001G051700 ID=Potri.001G051700.1.v4.1 annot-version=v4.1 ATGCAATCCACCTTCATTTCCCCACGCGCTACTCCACCGAAACCCCAAATGTCATTCCCCACACAACCCCACTTCCCCACTCGCCTCCCTCCCTATTCTC TGCGCGTCAAAGCTCAATCTGTCGCCGTTGAACCATCACAAGCAACAACCACAGTTGGGCAAAAGCTAAACAAGTACAGTTCACGCATTACTGAGCCCAA GTCCCAAGGTGGGTCTCAAGCAATCCTTCATGGGGTTGGTTTATCGGATGCTGACATGTCTAAGCCTCAGATAGGTATCTCTTCAGTTTGGTATGAAGGG AATACTTGTAACATGCACCTGTTGAAGCTATCAGAGGCTGTTAAAAGAGGGGTTGAAGAGGCAGGGATGGTTGGTTTCAGGTTTAATACAATTGGCGTTA GTGACGCTATTTCAATGGGGACTAGAGGGATGTGTTACAGTTTGCAAAGCAGAGACTTGATTGCTGATAGCATCGAGACTGTTATGAGTGCCCAATGGTA TGATGGCAATATCTCCATCCCTGGCTGTGATAAAAATATGCCAGGTACTATTATGGCAATGGGAAGGCTGAATCGACCTAGCATTATGGTTTATGGTGGA ACTATCAAGCCTGGTCACTTCAATGGCCATACTTATGATATAGTATCTGCATTTCAGGTTTATGGAGAGTATGTAAGTGGATCTATAAACGATGATGAAA GAAAAAATGTGATTCGTAATTCCTGCCCTGGAGCAGGGGCATGTGGTGGAATGTATACAGCTAACACCATGGCTTCTGCTATTGAAGCCTTGGGAATGTC TCTTCCTTACAGCTCCTCAATCCCTGCTGAAAACCAATTGAAGTTGGATGAGTGCCGTTTAGCTGGAAAATATCTGCTAGAACTATTGAAGATGGACTTG AAACCACGAGATATTATCACTCGCAAGTCACTACGTAATGCAATGGTTATTGTCATGGCACTAGGTGGCTCTACTAATGCTGTGTTACACTTAATTGCGA TCGCAAGGTCTGTCGGATTGGAGTTGACCCTTGATGATTTCCAGAAGGTCAGTGATGAGGTTCCATTCCTTGCAGATCTGAAGCCTAGTGGAAAATATGT CATGGAGGATGTGCATAAGATTGGGGGAACACCTGCTGTCCTTCGCTACCTTTTGGAGCATGGTTTCCTTGACGGGGACTGTTTGACTGTCACTGGGAAG ACTTTGGCTGAAAATGTGCGAAATTGTCCACCATTGTCTGAGGGGCAGGACATAATAAAGTCATTGGATAACCCCATTAAGAAAACAGGTCACCTCCAAA TATTACGTGGAAATCTTGCACCAGAGGGTTCTGTGGCTAAAATTACTGGAAAAGAAGGGTTATATTTCTCTGGTCCTGCACTTGTATTTGAGGGAGAGGA ATCTATGATTGCAGCTATCTCAGAAGATCCCATGAGTTTTAAGGGGAAAGTAATAGTTATTAGAGGAGAGGGGCCAAAAGGAGGACCGGGCATGCCTGAA ATGCTAACACCAACCAGTGCAATAATGGGAGCAGGTCTTGGGAAGGATTGTGCATTGTTGACTGATGGTAGATTTTCAGGAGGTTCACATGGATTTGTTG TTGGTCACGTAAGCCCTGAAGCACAGGAAGGTGGTCCGATTGGTCTCGTTAGAAATGGGGATATCATTAACGTTGATGTCCGGGAGAAGAGATTAGATGT TCAATTAACAGACATGGAATTGGAAGAGCGAAGAAAAAATTGGACTCCACCTCCATACAAGGCCACCCGAGGGGTTTTATACAAGTATATCAAGAATGTG CAATCTTCTTCAAAGGGATGTGTAACAGATGAATAG
AA sequence Show only first row Show all	>Potri.001G051700.1 pacid=42791559 polypeptide=Potri.001G051700.1.p locus=Potri.001G051700 ID=Potri.001G051700.1.v4.1 annot-version=v4.1 MQSTFISPRATPPKPQMSFPTQPHFPTRLPPYSLRVKAQSVAVEPSQATTTVGQKLNKYSSRITEPKSQGGSQAILHGVGLSDADMSKPQIGISSVWYEG NTCNMHLLKLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDGNISIPGCDKNMPGTIMAMGRLNRPSIMVYGG TIKPGHFNGHTYDIVSAFQVYGEYVSGSINDDERKNVIRNSCPGAGACGGMYTANTMASAIEALGMSLPYSSSIPAENQLKLDECRLAGKYLLELLKMDL KPRDIITRKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELTLDDFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVLRYLLEHGFLDGDCLTVTGK TLAENVRNCPPLSEGQDIIKSLDNPIKKTGHLQILRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVIVIRGEGPKGGPGMPE MLTPTSAIMGAGLGKDCALLTDGRFSGGSHGFVVGHVSPEAQEGGPIGLVRNGDIINVDVREKRLDVQLTDMELEERRKNWTPPPYKATRGVLYKYIKNV QSSSKGCVTDE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23940			dehydratase family (.1.2)		Potri.001G051700 [exp]	0	1
AT5G65550			UDP-Glycosyltransferase superf...		Potri.008G024801 [exp]	5.38	0.7341
AT5G23300		PYRD	pyrimidine d (.1)		Potri.007G074101 [exp]	6.92	0.7261
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Potri.009G093100 [exp]	8.94	0.6688
AT5G23300		PYRD	pyrimidine d (.1)		Potri.007G074201 [exp]	11.22	0.7340
AT3G13580			Ribosomal protein L30/L7 famil...		Potri.008G008000 [exp]	16.73	0.7067	RPL7.3
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Potri.017G038700 [exp]	18.16	0.6846	SDG943
AT4G29170		ATMND1	Mnd1 family protein (.1.2)		Potri.018G069800 [exp]	18.52	0.6910
AT1G28510			Optic atrophy 3 protein (OPA3)...		Potri.011G059800 [exp]	19.97	0.6653
AT3G11420			Protein of unknown function (D...		Potri.008G058900 [exp]	20.17	0.6829
AT4G36130			Ribosomal protein L2 family (....		Potri.007G013000 [exp]	20.97	0.6889

Compare expression of checked genes

Potri.001G051700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.