Plant FIBer expression Database

Potri.001G051800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33150 673 / 0 PED1, KAT2, PKT3 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1)
AT1G04710 644 / 0 KAT1, PKT4 3-KETO-ACYL-COA THIOLASE 1, peroxisomal 3-ketoacyl-CoA thiolase 4 (.1)
AT5G48880 589 / 0 PKT2, PKT1, KAT5 PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1, 3-KETO-ACYL-COENZYME A THIOLASE 5, peroxisomal 3-keto-acyl-CoA thiolase 2 (.1.2.3)
AT5G48230 171 / 1e-48 EMB1276, ACAT2 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2)
AT5G47720 167 / 6e-47 Thiolase family protein (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G051900
[exp]
737 / 0 AT2G33150 780 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1)
Potri.002G216400
[exp]
620 / 0 AT2G33150 660 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1)
Potri.006G004400
[exp]
167 / 8e-47 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5)
Potri.014G168700
[exp]
148 / 4e-40 AT5G48230 665 / 0.0 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2)
Potri.013G097500
[exp]
92 / 4e-23 AT1G04710 94 / 2e-24 3-KETO-ACYL-COA THIOLASE 1, peroxisomal 3-ketoacyl-CoA thiolase 4 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023672
[exp]
676 / 0 AT2G33150 818 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1)
Lus10011748
[exp]
630 / 0 AT2G33150 767 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1)
Lus10022812
[exp]
621 / 0 AT2G33150 702 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1)
Lus10011879
[exp]
616 / 0 AT2G33150 725 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1)
Lus10039109
[exp]
172 / 8e-49 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5)
Lus10038749
[exp]
169 / 1e-47 AT5G47720 663 / 0.0 Thiolase family protein (.1.2.3.4.5)
Lus10006362
[exp]
158 / 9e-44 AT5G47720 652 / 0.0 Thiolase family protein (.1.2.3.4.5)
Lus10012317
[exp]
158 / 2e-41 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0046 Thiolase PF00108 Thiolase_N Thiolase, N-terminal domain
CL0046 Thiolase PF02803 Thiolase_C Thiolase, C-terminal domain
Representative CDS sequence
>Potri.001G051800.1 pacid=42792415 polypeptide=Potri.001G051800.1.p locus=Potri.001G051800 ID=Potri.001G051800.1.v4.1 annot-version=v4.1
ATGGAGAAAGCAAGCAACAGGCAACGTGTTCTTCTCGGTCACCTCCGTTCTTCTTCTTCTTATAACAATCATGAATCCTCTCTTTCTGCATCTGCTTGTT
TAGCTGGAGGTAGCGCGGCATGTGGAGATGATGTCGTTGTTGTGGCGGCTTATCGAACTCCGCTATGCAAATCAAAGCGTGGTGGTTTCAAGGATACTCA
TGCTGATGATTTACTAGCACCTGTGTTGAAGGCATTGATAGAGAAAACTAATTTAGATGCAAGAGAAGTTGGGGATATTGTTGTGGGTTCGTCATTGGCA
CCAGGGTCTCAAAGAGCAAGCGAATGCAGGATGGCTGCGCTCTATGCTGGTTTCCCTGAAACTGTGCCGATAAGGACTGTCAATAGGAAATGTTCGTCTG
GGCTTCAGGCAGTTGCTGATGTGGCTGCTTCTATCAAAGCAGGGTTCTATGAAATTGGCATTGGAGCTGGTTTGGAATCCATGACAGTTAATTCAAGGGC
ATGGGTTGGAGATGTGAACCCAAAGGTAAAGCGCTTTCAGGAAGCCCAAGATTGCCTTCTACCCATGGGTGTTACTTCAGAGAATGTTGCACATCGTTTC
GGTGTGACAAGGCAGGAGCAGGATCAGGCTGCAGTTGATTCTCACAGGAAGGCCGCCGCCGCTTCTGCTTCTGGCAGATTCAAGGATGAAATCATCCCTG
TCGCTACAAAGATAGCTGACCCTAAAACTGGGGATGAGAAGCCCATAATAGTTTCTGTTGATGATGGGATTCGCCCAAACACATCATTAGCAGATCTGGG
AAAACTGAAGGCCGTGTTTAAGAAAGATGGGACCACCACTGCTGGGAATTCTAGCCAAATCAGTGATGGTGCTGCGGCTGTGTTGCTCATGAAAAGAAGT
GTTGCTATGCGCAAAGGGTTACCCATCCTTGGTGTATTCAGAACATTTGTTGTTGTTGGTGTGGATCCTGCCATCATGGGTGTGGGCCCAGCTGTTGCAA
TCCCCGCTGCAGTGAAGGCTGCTGGTCTAGAACTTGAGGATATTGATCTTTTTGAGATAAATGAGGCATTTGCTTCCCAGTTTGTATATTGTTGTAAGAA
GCTGGAGCTTGATCTGCAGAAGATCAATGTCAATGGGGGTGCAATAGCAATTGGACATCCTCTGGGTACAACAGGTGCTAGATGTGTGGCTACTATACTG
CATGAGATGAAGCGCCGTGGTAGGGACTGTCGCTTCGGAGTGGTTTCAATGTGCATAGGCACAGGAATGGGAGCTGCTGCTGTTTTTGAAAGGGGGGATG
GTTGTGATGAGCTCTGCAATGCTCGGAAAGTCGAAAGCAACAATCTCTTATCCAAGGATTCAAGATAG
AA sequence
>Potri.001G051800.1 pacid=42792415 polypeptide=Potri.001G051800.1.p locus=Potri.001G051800 ID=Potri.001G051800.1.v4.1 annot-version=v4.1
MEKASNRQRVLLGHLRSSSSYNNHESSLSASACLAGGSAACGDDVVVVAAYRTPLCKSKRGGFKDTHADDLLAPVLKALIEKTNLDAREVGDIVVGSSLA
PGSQRASECRMAALYAGFPETVPIRTVNRKCSSGLQAVADVAASIKAGFYEIGIGAGLESMTVNSRAWVGDVNPKVKRFQEAQDCLLPMGVTSENVAHRF
GVTRQEQDQAAVDSHRKAAAASASGRFKDEIIPVATKIADPKTGDEKPIIVSVDDGIRPNTSLADLGKLKAVFKKDGTTTAGNSSQISDGAAAVLLMKRS
VAMRKGLPILGVFRTFVVVGVDPAIMGVGPAVAIPAAVKAAGLELEDIDLFEINEAFASQFVYCCKKLELDLQKINVNGGAIAIGHPLGTTGARCVATIL
HEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGDGCDELCNARKVESNNLLSKDSR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G33150 PED1, KAT2, PKT... PEROXISOME DEFECTIVE 1, 3-KETO... Potri.001G051800
[exp]
0 1
Potri.015G135100
[exp]
3.46 0.8577
AT1G09740 Adenine nucleotide alpha hydro... Potri.005G157100
[exp]
4.47 0.8668
Potri.003G027933
[exp]
5.19 0.8565
AT5G58290 RPT3 regulatory particle triple-A A... Potri.006G029100
[exp]
15.23 0.7799
Potri.006G095100
[exp]
18.22 0.8347
AT1G72890 Disease resistance protein (TI... Potri.011G008548
[exp]
18.89 0.7203
AT1G23390 Kelch repeat-containing F-box ... Potri.010G042900
[exp]
19.39 0.7567
AT4G35300 TMT2 tonoplast monosaccharide trans... Potri.009G168500
[exp]
21.21 0.8222
AT3G54070 Ankyrin repeat family protein ... Potri.014G058100
[exp]
24.65 0.7951
AT1G12780 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERAS... Potri.003G123700
[exp]
27.05 0.7520

Potri.001G051800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.