Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04700 722 / 0 PB1 domain-containing protein tyrosine kinase (.1) AT3G24715 470 / 2e-147 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G16270 458 / 2e-142 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT2G35050 457 / 3e-141 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G79570 456 / 1e-140 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 417 / 3e-128 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 416 / 7e-127 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G67890 178 / 5e-46 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G49470 172 / 8e-46 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06640 174 / 7e-45 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G176100 [exp] 1682 / 0 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.001G123500 [exp] 464 / 3e-143 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 457 / 6e-140 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.005G095200 [exp] 450 / 1e-138 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.007G069500 [exp] 446 / 3e-137 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Potri.006G170700 [exp] 423 / 1e-129 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 424 / 2e-127 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 409 / 2e-124 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 412 / 3e-123 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038160 [exp] 474 / 2e-158 AT3G24715 527 / 2e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031749 [exp] 456 / 9e-147 AT1G16270 703 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Lus10031173 [exp] 456 / 4e-142 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001315 [exp] 417 / 5e-133 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 424 / 7e-129 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 417 / 6e-128 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 424 / 1e-127 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 370 / 4e-110 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10038159 [exp] 182 / 5e-47 AT3G24715 229 / 4e-62 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031750 [exp] 161 / 6e-43 AT1G79570 334 / 1e-104 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G052000.1 pacid=42787659 polypeptide=Potri.001G052000.1.p locus=Potri.001G052000 ID=Potri.001G052000.1.v4.1 annot-version=v4.1 ATGACTCGTGAAACGCCTGGTAGCTCAGGCCAGAAGCTCTTTGGAGACAAAATAAAAGTTGTGGCTAGTGACAGAATTGCTGCAGATAGAAATGCAAATA ATATTTGTGTACAGACAGGTGAGGAATTTTCTCCCCAGTTTGCTCGAAGAAGAGTTCCAGAACTGCACGAGCTAGGGAAAATGGGATTCAATCATAATCA CAATAATCTGATGGGTTCTGAAAATCATACCAGCACTCGTGGGATGAGGAGAAAGGAGTCTGATTGTGATGCTTTAGGTTATGTTTCCAGGATAGAAGCC ACAGGACATGCTGCTGAACTAGAAAATAAGGCCTATAATGATGATACAGGCAGATACCACTGGGAGTATGCCCCCAATGCACAAAAACCAAGTAACTATG TTGATGAAACGAGTAATTATGGTCAAGTAACCTTATGTCCAAGTCCGACCAGTCCACCTAAATGTGTGCAGGAAACCCCTTGGCCATATCAGCCTTTTGT AACTAGAGTTTCAGAAAGCACTTTCTCAGGAAAAATGAAATTTCTATGCAGCTTTGGGGGAAGGATATTACCGAGGCCAAATGATGGGAAGCTTAGATAT GTGGGTGGAGAAACGAGGATCATATCCATCAGAAAAAATGTTACAAGGGGGGAGCTTGCAAAGAAAACTTTGGCAATTTGTGGCCATCCTCATACGATCA AGTACCAGCTCCCTGGCGAGGATCTTGATGCGCTTATTTCTGTTTCTTCTGATGAAGATCTTTATCACATGATAGAGGAATATCAAGAGCTTGAAAGAAA TGGAGGCACTCAAAGACTGCGGATATTTCTTGTTTCTTCAGGTGAACCTGACAGCCCAAATTCTTTTGAAGGTAAGACCTCACAACAGCGTAATGCTGAT TACCATTATGCTGTCGCTGTTAATAGTATGTTGGACCTCAGTTCCCAGAAGAGCTCTAGTGGACAGAGTTCTGCAAGCCATCAAGGAACTGCTTCAGATT ATAAGAATCTATCTCCTCCTGTAACTCCACTTAACATTCAGTACAGAGATCATAAGAATTCTAAAGGCCTATTTTATGTTGATCAATCTTTCCCTGACAG TAATAAGAAACACGGTGCTTTTTCGGAAGAGAAATTTCCATCTGACACTACATATTATAATAATCTTCCTCGTGTACCGATGCCATTGGTGAATCAAGCC TGTCATCACCAATATCCAGTTGAAACTGATCAGACTAGCAAACAATTAGAAATGCATCTTCATAATCGTTGCGAAAGTGGAGATTTTCTTCCGTATCAGC TATGTCCTCAAAATTCTATCAATTCAGACTGGCCTTCGATTATGGAAAGGGCATTTTCTGACTCACAGTTGCGGGAGAATGGTGAGGTGTCAAAAAAATG GTTGGAAGAAGCAGTTATTACACTGTCCCTGTGTAATAATGAACGGGAAAAATCACCTTCACTGAAAATGTCAAATTCATCCTCAGAAAGGCCAATGCTG TGGCCATATGTAATGGATGAGAAACACCAATTCACTGACTTCGAGAACCTTTGCAGAGAAAAGCTGGGTAATATTGACACTGATCAAGAGGTGCTGAATT GGATGGACAGGAATGTTAACTATTCTGATGTAGACAGAGAACAGAATGAAGGAAATGTTAAAGCTTCATCAAATGATAATGTCATCGAGCATAGGAACTT ACCGAATTTGAAATACCGTCCAAGTGCTTATCATCATCCTCAAGATTCTCAAGCATATGGAAGGGTGGTTTCTGCTACTCGAGTGTACCCTTTGGAAAAT TCTGCAGATATTGCGAGGGAGCACCCTCAGGGTCACCTATCAGGCACCAAAGCACCTTACTTGTTTGTTGAGAACCAAAAGGTTTCCAAGGATCAGCAGT GTGCTATGACTGAGAGCATCAGGGGTCAACGAATTTCCCATGGAGATCCTGAATATCTACATTCTGCATCCCTTGAATCAAGGGACAAGAAACCGAAAGT CCTTAGCTCTAAATCGGATAGGAGTGCTTCAACTAGATTTCTTTCCTTGTGTGATGAAGACCCCGTGGAGTATCCTGAAAAGATCGAAAAGATTCGTGAC AAGGGACAATCATACGAGGAACCATTGGACAGAGATGCTCAGTTTGTCCAGTCACAGCCCTTAGATGACCATCATGATGATAAGATGCTGGAGCCAGAGG TAATTGTTGAGGATGTTACTGGAACTACGCCTCCCGATATTCCTTTGTCTTTGAATGTTGTCCCACGTGTAGAGGAAGAGGTCACAGAGGGATTTCAATC TGATAGAGATACTGAGGCAGAAAGCACTTGTCAAGATCAAGAATATGAATCCGAGGATATTGAAGATTCTGACAGAGACACAAATGATTCCATTAGTGAT GCTGCGATGGCTGAAATCGAAGCAGGCATCTATCATTTGCAGATTATAAAGTACGCGGATATTGAAGAAGTGCAAGAATTAGGATCTGGCACATTTGGAA CTGTTTATTATGGGAAATGGAGGGGAAGTGATGTTGCTATTAAAAGAATCAAAAGGAGTTGTTTTTCAGGAAATTCATCAGAACAAGAGCGATTGACTAG AGACTTCTGGAGAGAGGCTCGCATCCTGTCAGATCTTCACCATCCAAATGTGTTAGCATTTTATGGCGTAGTCCCTGATGGGCCTGGGGGGACAATGGCC ACTGTGACTGAATATATGGTGAATGGATCATTGAGGCGTGTCCTACGAAAGAAGGATAGAGCACTAGATCGTCGAAAAAAACTTATAATTGCTCTGGATG CTGCTTTTGGCATGGAATATCTGCATTTGAGAGATATCATTCATTTTGATTTGAAGTGCGACAATTTGCTTGTCAATTTAAAGGATCCCCAACGACCCAT ATGCAAGGTTGGAGATTTTGGATTGTCAAAAATCAAAAGGAATACGCTCGTATCTGGTGGTGTGCGTGGAACCCTTCCATGGATGGCACCGGAGTTATTG GATGGCAACAGCAACCGAGTCTCTGAGAAGGTTGATGTCTTCTCGTTTGGTATTGCAATGTGGGAGATCCTGACAGGTGAAGAGCCATATGCCAACATGC AATTCGGTGCTATAATAGGCGGAATTGTAAGTAACACTCTGAGACCTCGTATACCAGAGAATTGTGATGCTGGATGGAGAAAGCTGATGGAAGAATGCTG GGCGTTCGATCCAGAAGCCAGACCATCATTCACAGAGATAACGAATAGGCTGCGAGTTATGTCAACAGCACTCCAGCCAAAGCGACATAATCATGCAAAT AAATGA
AA sequence Show only first row Show all	>Potri.001G052000.1 pacid=42787659 polypeptide=Potri.001G052000.1.p locus=Potri.001G052000 ID=Potri.001G052000.1.v4.1 annot-version=v4.1 MTRETPGSSGQKLFGDKIKVVASDRIAADRNANNICVQTGEEFSPQFARRRVPELHELGKMGFNHNHNNLMGSENHTSTRGMRRKESDCDALGYVSRIEA TGHAAELENKAYNDDTGRYHWEYAPNAQKPSNYVDETSNYGQVTLCPSPTSPPKCVQETPWPYQPFVTRVSESTFSGKMKFLCSFGGRILPRPNDGKLRY VGGETRIISIRKNVTRGELAKKTLAICGHPHTIKYQLPGEDLDALISVSSDEDLYHMIEEYQELERNGGTQRLRIFLVSSGEPDSPNSFEGKTSQQRNAD YHYAVAVNSMLDLSSQKSSSGQSSASHQGTASDYKNLSPPVTPLNIQYRDHKNSKGLFYVDQSFPDSNKKHGAFSEEKFPSDTTYYNNLPRVPMPLVNQA CHHQYPVETDQTSKQLEMHLHNRCESGDFLPYQLCPQNSINSDWPSIMERAFSDSQLRENGEVSKKWLEEAVITLSLCNNEREKSPSLKMSNSSSERPML WPYVMDEKHQFTDFENLCREKLGNIDTDQEVLNWMDRNVNYSDVDREQNEGNVKASSNDNVIEHRNLPNLKYRPSAYHHPQDSQAYGRVVSATRVYPLEN SADIAREHPQGHLSGTKAPYLFVENQKVSKDQQCAMTESIRGQRISHGDPEYLHSASLESRDKKPKVLSSKSDRSASTRFLSLCDEDPVEYPEKIEKIRD KGQSYEEPLDRDAQFVQSQPLDDHHDDKMLEPEVIVEDVTGTTPPDIPLSLNVVPRVEEEVTEGFQSDRDTEAESTCQDQEYESEDIEDSDRDTNDSISD AAMAEIEAGIYHLQIIKYADIEEVQELGSGTFGTVYYGKWRGSDVAIKRIKRSCFSGNSSEQERLTRDFWREARILSDLHHPNVLAFYGVVPDGPGGTMA TVTEYMVNGSLRRVLRKKDRALDRRKKLIIALDAAFGMEYLHLRDIIHFDLKCDNLLVNLKDPQRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELL DGNSNRVSEKVDVFSFGIAMWEILTGEEPYANMQFGAIIGGIVSNTLRPRIPENCDAGWRKLMEECWAFDPEARPSFTEITNRLRVMSTALQPKRHNHAN K

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04700			PB1 domain-containing protein ...		Potri.001G052000 [exp]	0	1
AT2G30690			Protein of unknown function, D...		Potri.002G042500 [exp]	7.61	0.7930
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Potri.002G171800 [exp]	7.87	0.7037	CYP703.1
					Potri.013G031151 [exp]	12.32	0.6992
AT5G50120			Transducin/WD40 repeat-like su...		Potri.012G076000 [exp]	17.43	0.7366
					Potri.005G038250 [exp]	200.79	0.6640
					Potri.001G207600 [exp]	232.90	0.6680
AT5G06740			Concanavalin A-like lectin pro...		Potri.018G028800 [exp]	262.51	0.6613
AT3G20780		RHL3, HYP6, BIN...	ROOT HAIRLESS 3, ELONGATED HYP...		Potri.003G211000 [exp]	290.46	0.6538

Compare expression of checked genes

Potri.001G052000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.