Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-KAB1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04690 602 / 0 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT1G60690 99 / 3e-23 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04420 97 / 2e-22 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 96 / 2e-22 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 96 / 3e-22 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 94 / 1e-21 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 89 / 5e-20 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT5G53580 87 / 6e-19 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT4G33670 84 / 5e-18 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G06690 84 / 7e-18 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042100 [exp] 121 / 2e-31 AT1G04420 294 / 4e-97 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G167400 [exp] 113 / 2e-28 AT1G04420 612 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 109 / 3e-27 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 102 / 9e-25 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 99 / 2e-23 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 98 / 4e-23 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 94 / 1e-21 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.014G147700 [exp] 92 / 7e-21 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G052400 [exp] 87 / 3e-19 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011751 [exp] 618 / 0 AT1G04690 619 / 0.0 potassium channel beta subunit 1 (.1) Lus10023674 [exp] 617 / 0 AT1G04690 619 / 0.0 potassium channel beta subunit 1 (.1) Lus10028045 [exp] 128 / 4e-34 AT1G04420 286 / 2e-94 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 121 / 1e-31 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 113 / 1e-28 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10003751 [exp] 111 / 2e-28 AT1G04420 174 / 1e-51 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 104 / 2e-25 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010340 [exp] 102 / 3e-24 AT1G04420 606 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041272 [exp] 100 / 1e-23 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 98 / 6e-23 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [poplar] [flax] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Potri.001G052100.3 pacid=42790288 polypeptide=Potri.001G052100.3.p locus=Potri.001G052100 ID=Potri.001G052100.3.v4.1 annot-version=v4.1 ATGCAATACAAGAATCTAGGGAGATCAGGGCTGAAGGTGAGCCAGCTCTCTTATGGAGCTTGGGTAAGTTTTGGGAACCAGCTAGATGTCAAGGAAGCCA AATCACTTTTGCAGTGTTGCAGAGACCATGGTGTCAATTTCTTTGATAACGCTGAGGTTTATGCTAATGGAAGAGCTGAGGAAATCATGGGTCAAGCCAT CCGTGAACTGGGTTGGAAGAGATCAGATATAGTTGTCTCTACTAAGATCTTTTGGGGAGGTTCTGGTCCTAATGATAAAGGCTTGTCTAGGAAACATATT CTTGAGGGTACTAAGGCTTCTCTTAAGAGATTGGATATGGATTATGTTGATGTCATTTATTGCCATCGCCCGGACACGTTCACGCCAATTGAAGAGACAG TGAGGGCAATGAATTACGTGATTGACAAAGGTTGGGCATTTTACTGGGGGACTAGCGAATGGTCAGCACAGCAGATCACTGAGGCTTGGGGCATTGCAGA GAGGTTGGACTTGGTGGGGCCAATTGTTGAGCAGCCAGAATACAATATGCTCTCCAGGCACAAGGTTGAGTCTGAGTACGTCCCATTGTATACCACCTAT GGCCTTGGTCTCACCACATGGAGTCCACTTGCATCTGGGGTGCTCACTGGAAAATACAACAAAGGAGGCGTACCTTCTGATAGCCGATTTGCTTTGGAAA ATTACAAAAATCTTGCTAGCAGGTCATTGGTTGATGATGTGCTAAAGAAGGTTAATGGATTGAAGCCGATTGCTGATGAACTAGGCGTGCCTTTATCTCA ACTTGCAATTGCATGGTGTGCTGCAAATCCAAATGTCTCGTCAGTTATCACTGGTGCTACAAAGGAATCTCAGATTCAAGAAAACATGAAAGCTGTTGAT GTGATCCCATTACTGACTCCTGCTGTGATGGAAAAGATTGAGGCTGTTGTTCAAAGCAAGCCGAAACGTCCAGATTCATTTAGGTAA
AA sequence Show only first row Show all	>Potri.001G052100.3 pacid=42790288 polypeptide=Potri.001G052100.3.p locus=Potri.001G052100 ID=Potri.001G052100.3.v4.1 annot-version=v4.1 MQYKNLGRSGLKVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGSGPNDKGLSRKHI LEGTKASLKRLDMDYVDVIYCHRPDTFTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVESEYVPLYTTY GLGLTTWSPLASGVLTGKYNKGGVPSDSRFALENYKNLASRSLVDDVLKKVNGLKPIADELGVPLSQLAIAWCAANPNVSSVITGATKESQIQENMKAVD VIPLLTPAVMEKIEAVVQSKPKRPDSFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Potri.001G052100 [exp]	0	1	Pt-KAB1.1
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Potri.009G037400 [exp]	2.23	0.7825	Pt-SMO2.2
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Potri.001G370200 [exp]	7.48	0.7502
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.004G131500 [exp]	7.74	0.7709	I.2
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.005G025100 [exp]	8.48	0.7556	Pt-RPT5.1
AT2G34590			Transketolase family protein (...		Potri.017G076500 [exp]	8.66	0.7268	PDH.1
AT3G07910			unknown protein		Potri.001G277100 [exp]	12.40	0.7059
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Potri.018G030900 [exp]	15.62	0.7610
AT3G12587			Oligosaccaryltransferase (.1)		Potri.008G053300 [exp]	18.70	0.7434
AT4G27380			unknown protein		Potri.001G406900 [exp]	18.81	0.6772
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.009G133000 [exp]	20.14	0.7275

Compare expression of checked genes

Potri.001G052100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.