Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13710 696 / 0 Pectin lyase-like superfamily protein (.1.2) AT1G04680 688 / 0 Pectin lyase-like superfamily protein (.1) AT3G07010 659 / 0 Pectin lyase-like superfamily protein (.1) AT3G24670 642 / 0 Pectin lyase-like superfamily protein (.1) AT5G48900 623 / 0 Pectin lyase-like superfamily protein (.1) AT3G24230 613 / 0 Pectate lyase family protein (.1) AT4G13210 605 / 0 Pectin lyase-like superfamily protein (.1.2) AT5G63180 582 / 0 Pectin lyase-like superfamily protein (.1) AT1G67750 582 / 0 Pectate lyase family protein (.1) AT4G24780 566 / 0 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G175900 [exp] 832 / 0 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 695 / 0 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 693 / 0 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.015G087800 [exp] 596 / 0 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 585 / 0 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 555 / 0 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.010G051800 [exp] 551 / 0 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 545 / 0 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.006G122000 [exp] 499 / 6e-175 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023679 [exp] 746 / 0 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011758 [exp] 722 / 0 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10038157 [exp] 687 / 0 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011885 [exp] 677 / 0 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 677 / 0 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 554 / 0 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 551 / 0 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10006456 [exp] 551 / 0 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 551 / 0 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10022310 [exp] 533 / 0 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.001G052300.1 pacid=42789296 polypeptide=Potri.001G052300.1.p locus=Potri.001G052300 ID=Potri.001G052300.1.v4.1 annot-version=v4.1 ATGGCGGTGTCTAGGAAATGGGCTTGTATGTTTTCTGCTGTGCTTCTGTTGTTGTTCGTTGGTGTAATGCCTACTACTTCAGGAACCAATGGTGGGATCT CTGCTCTTACCAGGAGTGTGGAAACAGAGAAGGTACAGAGCTCAAGCAACACAACTATGGCGGCCAGGTCTCAAGAAGAGGCGGATGCATTAAATGAGAA AGCAGTTGCCGATAACCCTGAAGAGGTTGTTTCAATGGTTGAGATGAGCATCCGCAACAGTACTGAAAGGAGGAGACTTGGTTACTTCTCTTGTGGAACA GGCAATCCTATTGATGATTGCTGGCGTTGTGACCCCAACTGGCAGAAGAACCGCAAGCGCCTTGCTGACTGTGGCATTGGTTTTGGAAGAAATGCTATTG GTGGCCGTGATGGTCGCTTCTATGTTGTTACTGATCCTAGTGATAATGACCCTGTGAACCCAAGGCCTGGTACTTTGCGCCATGCTGTGATCCAGGACGC TCCTCTATGGATTGTGTTCAAAAGGGACATGGTGATTCAATTGAAGCAGGAACTTATCATGAACAGCTTTAAGACAATTGACGGCCGTGGGGTCAATGTT CACATCGCTAATGGAGGGTGCATTACCATCCAATTTGTTACCAATGTGATCATTCATGGATTACACATTCATGATTGCAAGCCCACTGGCAATGCTATGG TGCGGAGCTCGCCTTCTCACTACGGATGGAGGACAATGGCTGATGGTGATGCCGTATCTATTTTTGGTTCAAGCCACATTTGGGTTGATCACAATTCGCT TTCTAATTGCGCTGATGGTCTGGTTGATGCTGTCATGGGTTCTACTGCCATTACCGTCTCCAACAACCACTTCACCCACCATAATGAGGTAATGCTATTG GGCCATAGTGACTCTTACACCAGAGACAAGCAAATGCAAGTGACCATTGCGTACAACCATTTTGGAGAGGGACTGATCCAGAGAATGCCAAGGTGTAGAC ACGGGTACTTCCATGTGGTGAACAATGATTACACTCACTGGGAAATGTATGCCATCGGTGGCAGTGCAGAACCCACCATCAACAGCCAGGGCAACAGATA TAATGCTCCAGTCAACCCTTTTGCAAAGGAGGTGACAAAGAGGGTAGATACAGCCGCGGGCTATTGGAAAAACTGGAATTGGAGGTCAGAGGGAGACCTG CTGCTGAATGGTGCTTACTTCACTCCATCTGGAGCTGGAGCTTCGTCTAGCTATGCTCGCGCTTCAAGCTTGGGTGCCAAGTCTTCTTCCATGGTCGGGG CAATGACTGCTAATGCTGGTGCTCTTGGCTGCCGCAGGGCCCGCCAGTGCTAG
AA sequence Show only first row Show all	>Potri.001G052300.1 pacid=42789296 polypeptide=Potri.001G052300.1.p locus=Potri.001G052300 ID=Potri.001G052300.1.v4.1 annot-version=v4.1 MAVSRKWACMFSAVLLLLFVGVMPTTSGTNGGISALTRSVETEKVQSSSNTTMAARSQEEADALNEKAVADNPEEVVSMVEMSIRNSTERRRLGYFSCGT GNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPSDNDPVNPRPGTLRHAVIQDAPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNV HIANGGCITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAVSIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITVSNNHFTHHNEVMLL GHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYNAPVNPFAKEVTKRVDTAAGYWKNWNWRSEGDL LLNGAYFTPSGAGASSSYARASSLGAKSSSMVGAMTANAGALGCRRARQC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13710			Pectin lyase-like superfamily ...		Potri.001G052300 [exp]	0	1
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.009G140100 [exp]	2.82	0.8794
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Potri.009G064300 [exp]	2.82	0.8983	Pt-DRT100.1
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Potri.008G132700 [exp]	3.87	0.8889	Pt-CEL1.3
AT5G63180			Pectin lyase-like superfamily ...		Potri.015G087800 [exp]	4.00	0.8964
AT4G24780			Pectin lyase-like superfamily ...		Potri.006G196400 [exp]	6.48	0.8962
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Potri.014G111200 [exp]	7.07	0.8699
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Potri.006G264300 [exp]	15.19	0.7778
AT2G26730			Leucine-rich repeat protein ki...		Potri.018G074300 [exp]	17.43	0.8469
AT5G06940			Leucine-rich repeat receptor-l...		Potri.016G051600 [exp]	18.00	0.8867
AT4G13710			Pectin lyase-like superfamily ...		Potri.003G175900 [exp]	19.18	0.8942

Compare expression of checked genes

Potri.001G052300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.