Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24240 1365 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 1208 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G56040 857 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 833 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G34110 784 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 627 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 620 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 588 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G65700 578 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 568 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G175700 [exp] 1788 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 968 / 0 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G070900 [exp] 932 / 0 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G164800 [exp] 885 / 0 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G467300 [exp] 875 / 0 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.012G088100 [exp] 850 / 0 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.015G080800 [exp] 846 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G198000 [exp] 825 / 0 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 810 / 0 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011756 [exp] 1454 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023677 [exp] 1369 / 0 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018911 [exp] 927 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 922 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10032954 [exp] 837 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000509 [exp] 815 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 805 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 558 / 1e-180 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 557 / 1e-180 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10027221 [exp] 541 / 2e-174 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G052500.1 pacid=42788202 polypeptide=Potri.001G052500.1.p locus=Potri.001G052500 ID=Potri.001G052500.1.v4.1 annot-version=v4.1 ATGTCGATGCCCAGCTCGAGGCAAAACCTCCTCCTCTTCTCCTCCTCCACCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCATTAACATTCTTTATCCTAA ACACTCTTTTCTCAACTCTTCTTTTCACTTCTGCTGCTGCAATACCAAACCATGAGGCCTCTATTCTCTTTTCTTGGCTACATCCCTCTCCTTCAATATC TTCTTCTTTCTCTAATTGGAACAATCTTGATTCCACTCCATGCAAGTGGACCTCCATAACATGCTCTCCACAAGATTTTGTCACTGAGATAAACATTCAG TCAGTTCCTCTTCAAATTCCTTTTTCATTGAACCTCTCTTCATTTCAATCTCTTAGTAAACTTATCATCTCTGATGCTAATATCACTGGAACTATCCCAG TTGATATTGGTGACTGTATGTCACTTAAATTTATTGACCTTAGCTCTAATAGTCTTGTTGGAACCATTCCTGCAAGTATTGGCAAGCTTCAGAATCTTGA GGACTTGATTTTTAACTCTAATCAGTTAACTGGTAAGATCCCAGTTGAGATAAGCAACTGCATTAGACTCAAGAATCTGCTTCTCTTTGATAATCGTCTT GTTGGGTATATTCCACCTGAGCTAGGCAAGTTGTTCAGTCTTAAAGTCCTCAGAGCTGGCGGCAACAAAGACATTATTGGCAAAGTTCCTGATGAGCTCG GAGATTGCAGCAACTTGACTGTTTTGGGACTGGCTGATACAAGAATTTCAGGTTCTTTGCCTGTTTCATTGGGAAAGCTAAGCAAGCTGCAAAGTCTGTC CATTTATACTACAATGCTTTCTGGTGAGATTCCTCCTGATTTAGGTAACTGCTCTGAGCTTGTGAACTTGTTTCTTTATGAAAATAGTCTCTCTGGATCC ATTCCTCCGGAGATTGGCAAGCTTCATAAGCTCGAACAATTGTTGTTGTGGAAAAATAGTCTTGTTGGACCTATCCCAGAAGAGATTGGCAATTGCACTA GCCTGAAAATGATTGACCTTTCTTTGAATTCTCTTTCTGGGACTATACCTGTTTCAATAGGAGGCCTTTTTCAGCTTGTAGAGTTTATGATTAGTAATAA CAATTTTTCTGGTTCAATACCATCAAATATTTCTAACGCTACCAACCTTATGCAACTACAACTGGACACAAATCAGATCTCAGGTTTGATCCCACCTGAG CTTGGAATGTTGTCGAAGCTCACTGTGTTTTTTGCCTGGCAAAACCAGCTTGAAGGAAGCATTCCTTCAAGTTTGGCTAGTTGCAGTAACCTCCAAGCAC TAGATTTGTCTCACAATTCACTCACTGGTAGCATTCCTCCAGGCCTGTTTCAGCTTCAAAACCTCACAAAACTTCTCTTGATATCCAACGACATTTCTGG TGCTTTACCACCAGAAATAGGTAATTGTAGCTCTCTAGTGCGTTTAAGGCTTGGTAACAACAGGATTGCTGGTACCATTCCTAAAGAAATCGGAGGTCTT GGAATCTTGAACTTTCTTGATCTGTCCAGCAATCGCCTTTCTGGGCCGGTGCCTGATGAGATTGGAAACTGCACAGAACTGCAAATGATAGACCTTAGCA ACAACATTTTACAGGGTCCTCTGTCAAATTCATTGTCATCTCTAACTGGGCTCCAGGTCCTGGACGCTTCAACTAATCAATTTACTGGTCAGATACCAGC AAGTTTTGGTCGTCTTATGTCACTAAACAAGCTAATTTTAAGTAGGAATTCATTCTCTGGATCAATACCTTTGTCGCTTGGCCTATCCTCAAGTCTTCAA TTGCTTGATCTCAGCAGCAATGGGCTCACTGGCAGCATCCCAATGGAACTGGGTCATATCGAAACCCTTGAAATTGCTCTCAATCTCAGCAGCAATGGAC TTACAGGGCCAATCCCACCTCAGATATCTGCACTGACTAGGCTATCAATATTAGACCTTTCGCATAACAAGCTTGAGGGACAATTAAGTCCACTTGCAGG GCTTGACAACCTTGTTTCTCTCAACATATCTTACAATAACTTCACCGGTTATCTTCCTGATAATAAGCTGTTTAGACAGTTATCCCCTACAGACTTGGCA GGTAATCAAGGCCTATGTTCTTCAATCCAGGACTCGTGTTTCTTGAACGATGTTGACAGGGCAGGGCTGCCAAGAAATGAGAACGACTTAAGGCGGTCAC GAAGGCTTAAGCTAGCACTTGCTTTGCTGATCACATTGACTGTAGCAATGGTGATTATGGGAACAATCGCAATTATTCGGGCACGAAGAACCATTAGAGA TGATGATGATGATTCTGAGTTGGGCGATTCATGGCCCTGGCAATTTACTCCATTCCAGAAATTGAACTTCTCTGTCGATCAAGTACTGAGGTGCCTTGTG GATACCAACGTTATTGGGAAAGGATGTTCTGGGGTTGTTTATCGTGCTGATATGGACAATGGTGAAGTCATTGCAGTGAAGAAACTTTGGCCAAATGCAA TGGCTGCAGCCAATGGATGTGATGATGAAAAATGTGGTGTCCGTGATTCCTTCTCAACAGAGGTGAAAACACTTGGTTCCATCAGGCACAAGAACATTGT TAGGTTCTTGGGTTGTTGTTGGAATCGAAACACAAGATTGCTTATGTATGATTATATGCCTAATGGAAGCTTGGGCAGTCTCCTCCATGAAAGAACAGGA AATGCATTGCAATGGGAACTTAGGTACCAAATTTTGTTGGGAGCAGCTCAGGGTGTGGCTTATTTGCATCATGATTGTGTCCCTCCAATTGTTCATAGGG ATATAAAGGCTAATAACATTCTCATTGGCCTTGAATTCGAGCCTTACATTGCTGATTTTGGCCTTGCTAAGCTTGTTGATGATGGTGACTTTGCCCGGTC ATCCAATACAGTTGCTGGATCTTATGGATACATTGCTCCTGAATATGGCTACATGATGAAGATCACAGAAAAGAGCGATGTCTATAGCTATGGTGTGGTG GTATTAGAAGTCTTGACGGGCAAGCAACCGATTGATCCAACAATACCAGATGGACTACATGTGGTGGATTGGGTGAGACAGAAGAGGGGAGGAATTGAAG TGTTAGATCCAAGCCTACTATCTCGACCGGCGTCAGAAATTGAAGAAATGATGCAAGCATTAGGCATCGCCTTGTTGTGTGTAAATTCATCCCCCGATGA AAGACCAAATATGAAAGACGTGGCTGCAATGCTTAAGGAGATCAAACATGAAAGGGAGGAGTATGCAAAGGTTGATGTGCTCCTTAAGGGATCACCAGCA CCTGATAATCAAGAAAATAAGAAGTCCAGTGGAGTTCCAGCGACATCATCATCAAAGGCAGCAACACAAAGTTTGTTTCCAAAGAGCAATAACTCAAGTT TCTCTGCATTCTCATCACTTTACTCATCTTCTTCCAACTCCAAAACTGGTTTCAAGTGA
AA sequence Show only first row Show all	>Potri.001G052500.1 pacid=42788202 polypeptide=Potri.001G052500.1.p locus=Potri.001G052500 ID=Potri.001G052500.1.v4.1 annot-version=v4.1 MSMPSSRQNLLLFSSSTSSSSSSSSSSLTFFILNTLFSTLLFTSAAAIPNHEASILFSWLHPSPSISSSFSNWNNLDSTPCKWTSITCSPQDFVTEINIQ SVPLQIPFSLNLSSFQSLSKLIISDANITGTIPVDIGDCMSLKFIDLSSNSLVGTIPASIGKLQNLEDLIFNSNQLTGKIPVEISNCIRLKNLLLFDNRL VGYIPPELGKLFSLKVLRAGGNKDIIGKVPDELGDCSNLTVLGLADTRISGSLPVSLGKLSKLQSLSIYTTMLSGEIPPDLGNCSELVNLFLYENSLSGS IPPEIGKLHKLEQLLLWKNSLVGPIPEEIGNCTSLKMIDLSLNSLSGTIPVSIGGLFQLVEFMISNNNFSGSIPSNISNATNLMQLQLDTNQISGLIPPE LGMLSKLTVFFAWQNQLEGSIPSSLASCSNLQALDLSHNSLTGSIPPGLFQLQNLTKLLLISNDISGALPPEIGNCSSLVRLRLGNNRIAGTIPKEIGGL GILNFLDLSSNRLSGPVPDEIGNCTELQMIDLSNNILQGPLSNSLSSLTGLQVLDASTNQFTGQIPASFGRLMSLNKLILSRNSFSGSIPLSLGLSSSLQ LLDLSSNGLTGSIPMELGHIETLEIALNLSSNGLTGPIPPQISALTRLSILDLSHNKLEGQLSPLAGLDNLVSLNISYNNFTGYLPDNKLFRQLSPTDLA GNQGLCSSIQDSCFLNDVDRAGLPRNENDLRRSRRLKLALALLITLTVAMVIMGTIAIIRARRTIRDDDDDSELGDSWPWQFTPFQKLNFSVDQVLRCLV DTNVIGKGCSGVVYRADMDNGEVIAVKKLWPNAMAAANGCDDEKCGVRDSFSTEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERTG NALQWELRYQILLGAAQGVAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFARSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVV VLEVLTGKQPIDPTIPDGLHVVDWVRQKRGGIEVLDPSLLSRPASEIEEMMQALGIALLCVNSSPDERPNMKDVAAMLKEIKHEREEYAKVDVLLKGSPA PDNQENKKSSGVPATSSSKAATQSLFPKSNNSSFSAFSSLYSSSSNSKTGFK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24240			Leucine-rich repeat receptor-l...		Potri.001G052500 [exp]	0	1
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Potri.015G025900 [exp]	6.78	0.9212
AT3G05390			unknown protein		Potri.017G135100 [exp]	7.54	0.9331
AT5G06070	C2H2ZnF	RAB, RBE	RABBIT EARS, C2H2 and C2HC zin...		Potri.008G059000 [exp]	19.79	0.9113
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G080500 [exp]	20.92	0.9156	CYP716B4
					Potri.013G070350 [exp]	22.97	0.9147
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.006G037000 [exp]	25.49	0.8901	PIN8,Pt-PIN2.2
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Potri.003G156200 [exp]	26.60	0.9127
AT1G16310			Cation efflux family protein (...		Potri.010G172700 [exp]	26.64	0.9141
AT5G58750			NAD(P)-binding Rossmann-fold s...		Potri.009G045700 [exp]	27.74	0.9008
AT2G41705			camphor resistance CrcB family...		Potri.002G086800 [exp]	36.33	0.8956

Compare expression of checked genes

Potri.001G052500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.