Plant FIBer expression Database

Potri.001G052800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G175500
[exp]
109 / 1e-31 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G052800.2 pacid=42791761 polypeptide=Potri.001G052800.2.p locus=Potri.001G052800 ID=Potri.001G052800.2.v4.1 annot-version=v4.1
ATGGCTAGCTGGGTTGTGATTTTTGTGATTGTTTTAGCATTTGTGCATGCATCTGCACGTAATGTTCCTAGTGATGCTGATCTTGATAGCAAAAATGTTG
TGCCTAATGAAGAGCAAGTGTTGCATGCTAGTGCACCAATGGCCGAGTCACCTAGCAGCACTGGCCTTAAGGACAAAAAGAATTTCATATATGGTGGTGT
TGGTGGCTTTGCTGGGATGGGAGGCTACGCTGGTATCATTGGTGGACTGCCAATTATTGGTGGCCTTGGTGGACTTGGGAAAAATGGAGGGATTGGAGGG
GTTGGTGGAATAGGAGGTGTTACTGGCCCTGGCACTGGTGGTCTTGGTGGTTTAGGAGGTGCAGGTGGCGGTGCAGGTGGTTCGACTCCACCATTGCCTT
AA
AA sequence
>Potri.001G052800.2 pacid=42791761 polypeptide=Potri.001G052800.2.p locus=Potri.001G052800 ID=Potri.001G052800.2.v4.1 annot-version=v4.1
MASWVVIFVIVLAFVHASARNVPSDADLDSKNVVPNEEQVLHASAPMAESPSSTGLKDKKNFIYGGVGGFAGMGGYAGIIGGLPIIGGLGGLGKNGGIGG
VGGIGGVTGPGTGGLGGLGGAGGGAGGSTPPLP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G052800
[exp]
0 1
AT5G53560 B5#2, ATB5-A, A... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.014G167550
[exp]
3.46 0.8832
AT5G56000 Hsp81.4, AtHsp9... HEAT SHOCK PROTEIN 90.4, HEAT ... Potri.011G163932
[exp]
17.83 0.8625
AT4G08810 SUB1 calcium ion binding (.1) Potri.003G219200
[exp]
27.49 0.8142
AT3G13410 unknown protein Potri.008G223987
[exp]
28.80 0.8590
AT5G61480 PXY, TDR TDIF receptor, PHLOEM INTERCAL... Potri.003G107600
[exp]
34.08 0.8533
AT2G42740 RPL16A ribosomal protein large subuni... Potri.002G109701
[exp]
38.23 0.8422
AT1G26690 emp24/gp25L/p24 family/GOLD fa... Potri.018G145544
[exp]
38.74 0.8412
AT2G45260 Plant protein of unknown funct... Potri.014G067600
[exp]
42.33 0.8438
AT3G20820 Leucine-rich repeat (LRR) fami... Potri.001G269800
[exp]
47.43 0.8419
AT2G21100 Disease resistance-responsive ... Potri.009G131000
[exp]
53.60 0.7772

Potri.001G052800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.