Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04650 860 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G175300 [exp] 1693 / 0 AT1G04650 900 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023676 [exp] 1119 / 0 AT1G04650 816 / 0.0 unknown protein Lus10011755 [exp] 1052 / 0 AT1G04650 752 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14868 [poplar] [flax] DUF4487 Domain of unknown function (DUF4487)
Representative CDS sequence Show only first row Show all	>Potri.001G053000.4 pacid=42791191 polypeptide=Potri.001G053000.4.p locus=Potri.001G053000 ID=Potri.001G053000.4.v4.1 annot-version=v4.1 ATGGAGAGAAAAAGCTCCAGCAAGGAGCTGCAGAATCTCCTTCAAGCCATCAAATCTTCAGATGTTGTTGAGAGCCGGATCGAACTGTTTGATAAGCTTC GGGATTTTGATTTACTGGAGAAATCTGATTTGGCTCCTGTTATCGAATGTCTCACAGTATTTTGGGAAGACTTCACTTGCTTGGATATATCTCAGTGCTT GTTAAACAAGTCTATTTTGAGTGTGGCTACGAAATATGTAGATTCAGGATTGTTTGGATGTTTAGTACAGTTTCTCGTTCTTGGGACAAAGGCAAGTGGG TGGTGCGGAAAACATCTGAAGATGACTGCTATGTCAACTGAGGAATCTCAAGAAGAAGAACATTCCAACCTATTCTTTCAGCTTCTTTTAGATTTATTGA GTCTCTCTTCTGCCAGTACGGTTGCTTTGACAAGACACCCTGTTTTTATTGACAATGCATCAGCAGCTATTGTTGAGAGATTCATTTTGGAACAGCTAAA TTTGATAAAAGACGTAGTATCAGAGTTTAAGACAATCAGCTCATTTGGCTCAGAAATACTAAAGGCTGCACAGACTGTGATTGATACTGTAATGAGACTA TGCAAAGGGTATTTTGATGCTGTGAATTGGGATCTTTTTGATTCAAGACCTGAGAAGGATGAAAACAATATAGATTCAGAAAGAGCCAATATAATGAATC ATGTTACAAACATAACAAAACGTACAACAGAGAAATTGTGTGAACTGGGGATCCTTGCAGGAAATGATGGTGGAAGTCTGGTAACCATTCTCAATGTGTC ATGGAAAGGTGTGGTTACCTTGCTTCAGCAAGGGAAGAGGGTGTCAAAAGAGATGTTAAGCGTTCAGGATATTATTGTAACCCTAATTTCACTGGTGAAT GAACCTCTTAGGTGTGCAGCCGAGGCTTGGTCTTCTTCACTGAGGGAAACCATTTCTTTAACTGAAGCCAGAAGGGCATTTCTTCCATCCAAGTTTTACC TTACCACTGTTGTGAAAATATCTTCCCTCTATCCATGCCAAGCATATTTGGTGTACAAGGAGGTGACACTCTGTGTCCTAATGATCTCAACCTTTAAAGT TTTACTGAGCTATGAAAAACTTTTGAACACTGCTAGTGAAGTGTTTTCAGAACTTTTGGAGAAGACATCAATGGATTTGCTGAATTCTTTACTCAATTCA ACTGAAGTGAAACAGGAGCACAAGTTTAAACTTCTGGACTGGTTGTTCAGTGATGAGTCCTGCTCAAATTCTATGCATGAAGGTTCAAGTATTTTTTCTC GCATGACTTCGATGGTTGAAATCTTTTCTGTGAGCTGTGAAGCTATGTCTGAAGCAAGATTATTGTTGCTTGGCAGGGTTGCATTGTTTCATGATTTGTT GAGATACTCCATGGTTCTTGAAGAAGACATAAGGATCAAGATCACTGGAAAATTTGGATGGTTTCTGGATATGCTTGTTGATGAAGATGTATACTCTTTC GTTCTTGATTTGCAGATTCCTGTGCCATATGGTTCAGGGAAAGCACAGGAATTGGTTTGGCAGCCTATGTTTTCTGCTCTTTTGCATGCACTAAAAACCT TCATGATTGTGGTGTATTCAAGTTGTGCCTGGGAAGAATTAGAGGCTTTCCTGCTTGAGAATCTTTTCCATCCACATTTTCTTTGCCGGGAGATTGTAAT GGAACTTTGGTGCTTTTTGGTGCGTTATGCTGAAATGGACATGGTGAATAGCATTATTGATAAACTTTGCTCATTACTGAAGCTCCTGGAATCTCCAGAG TCATTTCTTGTTCCAGGTTCTCCTCTGAGGAAAGTAGCAAGAATAATTTGCTTGCTTGCTAATGGTACAACACCTATGGCAGACCGTGTTTACAGCTCTG TAGTTGGTGATGGAAGATCTCAATTGTCATCAGTTATGTACGTAGCATTGCTCTTGGAAGGGTTTCCTCTAAATTCACTATCCGATAGCATCAGAAGTAC TGCAAAAGAGAAGATCATTACAGACTATTTTGGTTTCATAGGGAGTTTTGATGATAAAATGTTGACTACATGTAGTTCTGGTGCATTTGGGATCCCAGTT CATGCTCTATCTGCTTCCTTGCGGGCACAGCAGGTTAGCATATCTGATGTTGACATGAAGACCCTGAAGTTTTTAGTTGCTATAATTCGTAACTTCAGAA ACCCTGTGGAAAAAATAAGGAAGGAACACTATTATAAGCTTTTGAGTGGAACGTTGGGGATTGTCTCAAATATGAAGCATCTATACAAATCTGATGAGAT GGAGGGAGTCATATTGGAACTTCAAACCCTGTTTGTTTCAGCGCCAGCAGCATCAAGTACCCAATTGCATCAGTGCAAACCATATCTTGCTCTTTTTATG GGAGGACTTGGAGACATGGAGATGACAGAGAGTGATGATTGTGCAAAAAGCTCTGCTGTGTGGGAGTTGTACCACATGCTATTCAGGGAGCGGCATTGGG CACTTGTTCATCTTGCAATTGAAGCATTTGGATATTTTGCTGCTCGTACTTCTTGCAATCAGCTATGGAGATTTGTGCCACAAAATGCATCGCTTTCTTA TGATCTGATGTCAGGAAATGAAGCAAGCGAGAAGAGGTTTATGTCCGATTTGAAGGCATTTCTGGAGAAGGAAACAGCTCTTCTTAACACTACGCCTAGC ATGGAGCAGCTTGAGTTGCTTGTGACGGAAGGTATGACACTAAAAGAAATGGTTCAGAAGATCTCAAGGATACATATAGATGCTACGGAGTGTGAAAGTA TGGAGATTAATGTTGACATTGTGTCAAAAAAGAGACGGAAACTCCCTGATGGAATCAGCAGGGGAATGGAATTACTCCAGAGTGGTCTGAAGTTAATTGG TGGTGGTATTTCCCAGTGGCAGGAAAATCACTTCGAATCCTCTGAACTTCATGACAAGTTCTTGAGTCACCTTTCTTGCCTTGAAGACGTCGTTTCTCAC TTAACTGGCTTGGCTGGTAATGATTAA
AA sequence Show only first row Show all	>Potri.001G053000.4 pacid=42791191 polypeptide=Potri.001G053000.4.p locus=Potri.001G053000 ID=Potri.001G053000.4.v4.1 annot-version=v4.1 MERKSSSKELQNLLQAIKSSDVVESRIELFDKLRDFDLLEKSDLAPVIECLTVFWEDFTCLDISQCLLNKSILSVATKYVDSGLFGCLVQFLVLGTKASG WCGKHLKMTAMSTEESQEEEHSNLFFQLLLDLLSLSSASTVALTRHPVFIDNASAAIVERFILEQLNLIKDVVSEFKTISSFGSEILKAAQTVIDTVMRL CKGYFDAVNWDLFDSRPEKDENNIDSERANIMNHVTNITKRTTEKLCELGILAGNDGGSLVTILNVSWKGVVTLLQQGKRVSKEMLSVQDIIVTLISLVN EPLRCAAEAWSSSLRETISLTEARRAFLPSKFYLTTVVKISSLYPCQAYLVYKEVTLCVLMISTFKVLLSYEKLLNTASEVFSELLEKTSMDLLNSLLNS TEVKQEHKFKLLDWLFSDESCSNSMHEGSSIFSRMTSMVEIFSVSCEAMSEARLLLLGRVALFHDLLRYSMVLEEDIRIKITGKFGWFLDMLVDEDVYSF VLDLQIPVPYGSGKAQELVWQPMFSALLHALKTFMIVVYSSCAWEELEAFLLENLFHPHFLCREIVMELWCFLVRYAEMDMVNSIIDKLCSLLKLLESPE SFLVPGSPLRKVARIICLLANGTTPMADRVYSSVVGDGRSQLSSVMYVALLLEGFPLNSLSDSIRSTAKEKIITDYFGFIGSFDDKMLTTCSSGAFGIPV HALSASLRAQQVSISDVDMKTLKFLVAIIRNFRNPVEKIRKEHYYKLLSGTLGIVSNMKHLYKSDEMEGVILELQTLFVSAPAASSTQLHQCKPYLALFM GGLGDMEMTESDDCAKSSAVWELYHMLFRERHWALVHLAIEAFGYFAARTSCNQLWRFVPQNASLSYDLMSGNEASEKRFMSDLKAFLEKETALLNTTPS MEQLELLVTEGMTLKEMVQKISRIHIDATECESMEINVDIVSKKRRKLPDGISRGMELLQSGLKLIGGGISQWQENHFESSELHDKFLSHLSCLEDVVSH LTGLAGND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04650			unknown protein		Potri.001G053000 [exp]	0	1
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.003G100200 [exp]	1.41	0.8675	PCBERp8
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Potri.014G092300 [exp]	2.23	0.8703
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.006G052600 [exp]	4.47	0.8172	CESA4.1
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Potri.003G091500 [exp]	6.00	0.8021	Pt-BOU.2
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Potri.010G148500 [exp]	7.14	0.8627
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124500 [exp]	8.77	0.8235
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.011G153700 [exp]	10.95	0.8536	Pt-MOR1.1
AT5G57200			ENTH/ANTH/VHS superfamily prot...		Potri.018G142800 [exp]	11.48	0.8169
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.003G162100 [exp]	11.74	0.8337
AT5G07800			Flavin-binding monooxygenase f...		Potri.012G067500 [exp]	12.68	0.7939

Compare expression of checked genes

Potri.001G053000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.