Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33170 1312 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G63930 1259 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 981 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 618 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G34110 593 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 591 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G26540 588 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 575 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G56040 563 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G65700 556 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G174900 [exp] 1806 / 0 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.019G025500 [exp] 1330 / 0 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G051300 [exp] 1308 / 0 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 973 / 0 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G009300 [exp] 597 / 0 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.003G175700 [exp] 596 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G156200 [exp] 592 / 0 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.005G188700 [exp] 590 / 0 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.012G088100 [exp] 587 / 0 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023681 [exp] 1216 / 0 AT2G33170 1152 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10011761 [exp] 927 / 0 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10000509 [exp] 606 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 603 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011756 [exp] 577 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10032954 [exp] 571 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 542 / 1e-175 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039030 [exp] 545 / 3e-175 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10039641 [exp] 542 / 4e-175 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036251 [exp] 547 / 6e-175 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G053400.1 pacid=42789292 polypeptide=Potri.001G053400.1.p locus=Potri.001G053400 ID=Potri.001G053400.1.v4.1 annot-version=v4.1 ATGTCAGCACATTTCAGATCAAAGAGAGTATTTGAATTGAGGCTTGCTGGAATTTTGCTCGTTTCCATCCTATTGATATGTACTACAGAGGCGTTGAATT CTGAGGGGCAACGCCTCCTAGAGTTAAAGAATAGCCTCCATGACGAGTTCAATCATCTGCAGAATTGGAAGTCCACTGACCAGACACCATGCAGCTGGAC CGGTGTGAATTGCACTTCAGGTTATGAGCCTGTAGTCTGGTCCCTTAATATGAGCTCAATGAATCTTTCTGGGACTCTGAGCCCCAGTATTGGTGGTTTG GTCAACCTGCAATATTTTGATCTTTCTTACAATGTGATCACCGGAGATATACCTAAAGCTATTGGAAATTGTTCACTGTTGCAATTGCTTTATTTGAATA ACAATCAGTTGAGTGGGGAAATTCCTGCTGAACTGGGTGAATTGTCTTTTCTTGAACGTTTGAATATATGCAACAACAGGATATCCGGTTCACTTCCAGA GGAGTTTGGGAGACTATCTTCATTGGTTGAGTTTGTGGCTTATACCAACAAGCTGACTGGTCCATTGCCTCATTCTATAGGTAATCTCAAGAACCTGAAA ACCATCCGTGCAGGGCAGAATGAAATTTCTGGTAGTATTCCTTCTGAAATAAGTGGATGTCAGAGCTTGAAATTGCTTGGTCTTGCCCAAAATAAAATAG GAGGGGAGCTGCCGAAGGAACTTGGGATGCTTGGAAACTTGACTGAAGTGATTTTATGGGAGAACCAGATCTCAGGGTTTATACCAAAGGAGCTAGGGAA CTGTACAAACCTTGAGACACTTGCTCTATATTCAAATACTCTTACTGGACCAATACCAAAGGAAATTGGGAACCTGAGGTTTCTGAAGAAGCTGTACCTC TATCGGAATGGGTTGAATGGAACTATTCCAAGGGAAATTGGGAACCTTTCCATGGCAGCAGAAATTGATTTCTCAGAGAATTTTTTGACTGGTGAAATCC CAACTGAGTTCAGCAAGATAAAGGGTCTTCGACTTTTGTACCTCTTCCAGAACCAGCTTACAAGTGTCATACCAAAAGAGCTTAGTAGCTTGAGGAACTT GACTAAGCTTGACCTCTCAATCAATCACCTCACTGGTCCTATTCCTTCTGGGTTTCAATATTTGACTGAAATGCTCCAGTTACAGCTTTTTGACAACTCC TTGAGTGGTGGCATTCCTCAGGGGTTTGGACTTCATAGCCGACTCTGGGTGGTTGATTTTTCAGATAATGATCTGACTGGAAGAATACCTCCTCATCTTT GTCAACTTTCAAACCTGATTTTGCTGAATCTGGATTCTAACAGGTTATATGGAAATATCCCGACTGGGGTCCTGAACTGCCAAACATTGGTACAACTTCG TCTTGTTGGAAATAATTTTACAGGTGGCTTTCCTTCAGAGTTGTGCAAATTGGTGAATCTTTCTGCTATTGAACTGGACCAGAACAGTTTTACTGGTCCG GTTCCACCAGAGATTGGAAACTGCCAAAGGTTGCAAAGACTACATATTGCAAACAATTACTTTACTTCGGAGTTGCCGAAGGAAATAGGTAATCTGTTTC AACTTGTGACTTTTAATGCATCATCAAATTTGCTCACGGGAAGGATTCCACCCGAAGTTGTTAACTGCAAGATGCTCCAACGACTTGATCTTAGCCACAA CAGCTTTTCTGATGCTTTACCAGATGGGCTTGGAACTCTTCTTCAACTGGAGCTTCTCAGGCTTTCAGAAAATAAATTCTCCGGAAATATACCTCCGGCA TTAGGAAATCTCTCCCATTTGACTGAATTGCAGATGGGCGGCAACTCATTTTCTGGTCAAATTCCTCCAGCTTTGGGCTCGCTTTCAAGCTTGCAGATTG CAATGAATCTCAGTTATAACAATCTTACTGGCAGCATACCACCAGAGCTTGGTAATCTTAATTTACTGGAATTTCTCCTGCTCAATAACAACCATTTGAA TGGTGAGATTCCCATAACATTTGAAAATCTGTCAAGTTTACTGGGATGCAACTTCTCATACAATGAACTCACTGGACCTTTGCCTTCCATACCACTATTT CAGAACATGGCCACCAGCAGCTTTCTTGGAAACAAAGGGCTTTGTGGTGGGCCTCTTGGCTACTGCAGTGGAGATCCATCTTCTGGTTCTGTTGTACAAA AAAATCTGGATGCTCCTCGAGGTAGGATCATCACAATTGTTGCAGCCATTGTTGGTGGGGTTTCTCTCGTTCTGATTATAGTGATACTGTATTTCATGAG ACGTCCCACCGAGACAGCGCCTTCCATACATGATCAGGAGAATCCATCAACAGAATCAGATATCTACTTTCCTCTAAAGGACGGATTAACTTTCCAAGAT CTAGTTGAGGCCACCAACAATTTTCATGATAGCTATGTTCTTGGAAGGGGAGCATGTGGAACAGTCTATAAGGCAGTTATGCGTTCTGGGAAGATCATTG CTGTGAAAAAGCTTGCATCTAACAGGGAGGGGAGTGATATTGAGAATAGTTTTCGGGCTGAGATTCTGACTCTTGGAAAGATTAGGCACCGAAACATAGT GAAACTTTATGGGTTTTGCTATCATGAAGGTTCGAATCTGCTTCTTTACGAGTACATGGCTAGGGGTAGCTTGGGAGAACTGCTTCATGAGCCTTCTTGT GGCCTGGAATGGTCCACTCGGTTCTTGGTCGCTCTTGGAGCTGCTGAAGGGCTTGCTTATTTGCATCATGACTGCAAACCAAGAATTATTCACCGTGATA TAAAGTCGAATAATATTCTACTTGATGATAACTTTGAAGCCCATGTTGGTGATTTTGGTTTGGCGAAAGTTATTGACATGCCACAGTCCAAATCAATGTC AGCTGTTGCAGGATCATATGGGTATATTGCACCAGAATATGCATACACCATGAAGGTTACGGAAAAATGTGACATCTATAGTTATGGAGTTGTTCTATTG GAGTTGCTAACCGGAAAAACTCCAGTACAGCCACTAGATCAAGGAGGTGATCTTGTCACGTGGGCAAGACAATATGTTCGGGAGCATTCATTGACATCTG GGATACTTGATGAACGATTGGACCTTGAAGACCAAAGCACTGTTGCTCACATGATATATGTCTTGAAAATTGCTCTACTCTGCACAAGCATGTCGCCTTC TGATCGGCCATCAATGCGGGAAGTTGTGCTGATGCTTATCGAGTCTAATGAGAGAGAAGGTAACCTTACTCTGTCTTCGACTTATGTTTTTCCGTTGAAA GATGATGCTTCACGAAAATAG
AA sequence Show only first row Show all	>Potri.001G053400.1 pacid=42789292 polypeptide=Potri.001G053400.1.p locus=Potri.001G053400 ID=Potri.001G053400.1.v4.1 annot-version=v4.1 MSAHFRSKRVFELRLAGILLVSILLICTTEALNSEGQRLLELKNSLHDEFNHLQNWKSTDQTPCSWTGVNCTSGYEPVVWSLNMSSMNLSGTLSPSIGGL VNLQYFDLSYNVITGDIPKAIGNCSLLQLLYLNNNQLSGEIPAELGELSFLERLNICNNRISGSLPEEFGRLSSLVEFVAYTNKLTGPLPHSIGNLKNLK TIRAGQNEISGSIPSEISGCQSLKLLGLAQNKIGGELPKELGMLGNLTEVILWENQISGFIPKELGNCTNLETLALYSNTLTGPIPKEIGNLRFLKKLYL YRNGLNGTIPREIGNLSMAAEIDFSENFLTGEIPTEFSKIKGLRLLYLFQNQLTSVIPKELSSLRNLTKLDLSINHLTGPIPSGFQYLTEMLQLQLFDNS LSGGIPQGFGLHSRLWVVDFSDNDLTGRIPPHLCQLSNLILLNLDSNRLYGNIPTGVLNCQTLVQLRLVGNNFTGGFPSELCKLVNLSAIELDQNSFTGP VPPEIGNCQRLQRLHIANNYFTSELPKEIGNLFQLVTFNASSNLLTGRIPPEVVNCKMLQRLDLSHNSFSDALPDGLGTLLQLELLRLSENKFSGNIPPA LGNLSHLTELQMGGNSFSGQIPPALGSLSSLQIAMNLSYNNLTGSIPPELGNLNLLEFLLLNNNHLNGEIPITFENLSSLLGCNFSYNELTGPLPSIPLF QNMATSSFLGNKGLCGGPLGYCSGDPSSGSVVQKNLDAPRGRIITIVAAIVGGVSLVLIIVILYFMRRPTETAPSIHDQENPSTESDIYFPLKDGLTFQD LVEATNNFHDSYVLGRGACGTVYKAVMRSGKIIAVKKLASNREGSDIENSFRAEILTLGKIRHRNIVKLYGFCYHEGSNLLLYEYMARGSLGELLHEPSC GLEWSTRFLVALGAAEGLAYLHHDCKPRIIHRDIKSNNILLDDNFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLL ELLTGKTPVQPLDQGGDLVTWARQYVREHSLTSGILDERLDLEDQSTVAHMIYVLKIALLCTSMSPSDRPSMREVVLMLIESNEREGNLTLSSTYVFPLK DDASRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33170			Leucine-rich repeat receptor-l...		Potri.001G053400 [exp]	0	1
AT2G29970			Double Clp-N motif-containing ...		Potri.009G046700 [exp]	3.46	0.7912
AT1G54200			unknown protein		Potri.001G170500 [exp]	11.31	0.7363
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.004G235500 [exp]	13.07	0.7316
					Potri.007G113400 [exp]	18.81	0.7636
AT3G19870			unknown protein		Potri.008G085300 [exp]	19.49	0.7157
AT5G10370			helicase domain-containing pro...		Potri.005G071500 [exp]	20.78	0.7222
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.015G076650 [exp]	22.18	0.7446
AT3G14470			NB-ARC domain-containing disea...		Potri.004G197800 [exp]	23.21	0.7590
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261300 [exp]	28.72	0.7240
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026000 [exp]	28.77	0.7807

Compare expression of checked genes

Potri.001G053400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.