Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13590 417 / 4e-146 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT1G64150 140 / 4e-38 Uncharacterized protein family (UPF0016) (.1) AT5G36290 124 / 9e-33 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT1G25520 113 / 2e-29 Uncharacterized protein family (UPF0016) (.1) AT1G68650 110 / 2e-28 Uncharacterized protein family (UPF0016) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G174600 [exp] 541 / 0 AT4G13590 369 / 2e-127 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.003G134300 [exp] 149 / 2e-41 AT1G64150 344 / 6e-117 Uncharacterized protein family (UPF0016) (.1) Potri.019G053400 [exp] 124 / 6e-33 AT5G36290 328 / 4e-113 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.013G086700 [exp] 122 / 2e-32 AT5G36290 322 / 8e-111 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.019G116100 [exp] 112 / 5e-29 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.008G117900 [exp] 110 / 1e-28 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.010G128400 [exp] 106 / 6e-27 AT1G25520 335 / 1e-117 Uncharacterized protein family (UPF0016) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023685 [exp] 465 / 6e-165 AT4G13590 443 / 1e-156 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10011763 [exp] 436 / 2e-153 AT4G13590 429 / 6e-151 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10032330 [exp] 155 / 7e-44 AT1G64150 333 / 8e-113 Uncharacterized protein family (UPF0016) (.1) Lus10024713 [exp] 142 / 1e-38 AT1G64150 322 / 5e-108 Uncharacterized protein family (UPF0016) (.1) Lus10026995 [exp] 126 / 7e-34 AT5G36290 401 / 5e-142 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10035040 [exp] 120 / 3e-30 AT1G25520 339 / 4e-116 Uncharacterized protein family (UPF0016) (.1) Lus10034293 [exp] 111 / 9e-29 AT1G25520 349 / 2e-123 Uncharacterized protein family (UPF0016) (.1) Lus10041478 [exp] 108 / 1e-27 AT1G25520 327 / 1e-114 Uncharacterized protein family (UPF0016) (.1) Lus10020195 [exp] 98 / 4e-24 AT5G36290 321 / 5e-112 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [poplar] [flax] LysE PF01169 [poplar] [flax] UPF0016 Uncharacterized protein family UPF0016
Representative CDS sequence Show only first row Show all	>Potri.001G053600.3 pacid=42789756 polypeptide=Potri.001G053600.3.p locus=Potri.001G053600 ID=Potri.001G053600.3.v4.1 annot-version=v4.1 ATGCAGGGGCTGACCCTTTCAAAAACACCACTAACTTCAAGTGGTAGCAGCACCAAACCTCCGTTACTGCCTTTGGTGGATTCATTACCATGTTTTGCTG GCATTTCTAGAAAACCCATTTCAACTTCGTTAAGACGCAGAGAGATCTCAAAGTTGAATTCCAGATCCGGCACATTCAGAGCACAAGCATCCAATGTTGG TATAGGATCTGGGGGCTATGAAGGCAAGGAGGAACTAGACAACCAGAAAAGTTTTGTCAATGGTCCACCTGGTGATAACTTACCTGAAATTGTAAAACCA CCCAGCAAAATTCCTTATCCTCTATCTATAGCTATTGTGCTACTTGGATGTACTTTGGTATTTTCACTTATTGCTTTCCTGAGAGGTGGACCTTCATCAA TTTTAGCAGCAATCGCCAAGTCAGGATTGACTGCTGCATTCACATTAATATTTGTTTCTGAAATAGGGGACAAGACATTTTTTATTGCTGCACTCTTGGC CATGCAATATGAGAAAGGATTGGTTCTTCTGGGATCAATGGGTGCTCTTTCACTTATGACAATCTTGTCAGTGGTAATTGGACGAATATTTAATTCAGTG CCTGCTCAGTTCCAAACAACCCTGCCAATTGGAGAATATGCAGCAGTAACTCTTCTCATGTTCTTTGGGCTAAAATCAATAAAAGATGCGTGGGATCTTC CATCAAAGGATGCTAAGACTGGTGACAAAAGTTGTCCTGAACTTGATGAATATGCTGAAGCTGAGGAGCTTGTGAAAGAAAAGGTCTCAAAACCGCTCAC CAATCCATTTGAGATTGTGTGGAAGTCATTCAGCCTTGTCTTCTTTGCTGAATGGGGAGATCGCTCAATGCTTGCAACAATTGCTCTTGGTGCTGCGCAG TCTCCATGGGGTGTGGCAACTGGAGCCATTGCTGGGCACCTGGTTGCAACATCCTTTGCCATTCTAGGCGGAGCCTTTCTTGCGAACTACATTTCAGAAA AGCTGGTTGGCTACTTGGGTGGAGTGCTGTTTCTTGTTTTTGCTGTTGCCACTTTTTTTGGCTTCTTCTAA
AA sequence Show only first row Show all	>Potri.001G053600.3 pacid=42789756 polypeptide=Potri.001G053600.3.p locus=Potri.001G053600 ID=Potri.001G053600.3.v4.1 annot-version=v4.1 MQGLTLSKTPLTSSGSSTKPPLLPLVDSLPCFAGISRKPISTSLRRREISKLNSRSGTFRAQASNVGIGSGGYEGKEELDNQKSFVNGPPGDNLPEIVKP PSKIPYPLSIAIVLLGCTLVFSLIAFLRGGPSSILAAIAKSGLTAAFTLIFVSEIGDKTFFIAALLAMQYEKGLVLLGSMGALSLMTILSVVIGRIFNSV PAQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKDAKTGDKSCPELDEYAEAEELVKEKVSKPLTNPFEIVWKSFSLVFFAEWGDRSMLATIALGAAQ SPWGVATGAIAGHLVATSFAILGGAFLANYISEKLVGYLGGVLFLVFAVATFFGFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13590			Uncharacterized protein family...		Potri.001G053600 [exp]	0	1
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.006G258550 [exp]	1.41	0.9407
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Potri.002G077600 [exp]	4.00	0.9314
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Potri.001G329900 [exp]	7.00	0.9262
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Potri.002G186300 [exp]	7.07	0.9288
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.005G151200 [exp]	7.54	0.9293
AT4G33110			S-adenosyl-L-methionine-depend...		Potri.018G060000 [exp]	9.38	0.9067
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.005G155000 [exp]	12.00	0.9252
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Potri.003G015200 [exp]	15.87	0.9199	Pt-PETF.4
AT2G01918		PQL3	PsbQ-like 3 (.1)		Potri.017G129700 [exp]	16.24	0.9289
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Potri.001G467100 [exp]	18.02	0.9049

Compare expression of checked genes

Potri.001G053600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.