Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24040 506 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G03520 369 / 6e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G39990 367 / 7e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G15050 365 / 1e-123 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 363 / 6e-123 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 347 / 5e-116 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 337 / 4e-113 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G15350 336 / 3e-112 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G53100 326 / 2e-108 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT2G37585 311 / 3e-103 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075600 [exp] 366 / 5e-124 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 363 / 1e-122 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.008G128000 [exp] 355 / 5e-120 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G399500 [exp] 355 / 6e-120 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.004G130300 [exp] 353 / 6e-119 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.011G119600 [exp] 349 / 2e-117 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 340 / 1e-113 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 340 / 2e-113 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G114800 [exp] 336 / 2e-112 AT1G71070 581 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011765 [exp] 571 / 0 AT3G24040 491 / 4e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10023687 [exp] 570 / 0 AT3G24040 491 / 2e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 367 / 3e-124 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 363 / 8e-123 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10033714 [exp] 347 / 4e-116 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 342 / 1e-114 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10010887 [exp] 342 / 3e-114 AT1G71070 572 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10019477 [exp] 340 / 5e-114 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10025339 [exp] 339 / 2e-113 AT2G37585 483 / 6e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031626 [exp] 337 / 3e-112 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.001G053800.1 pacid=42788406 polypeptide=Potri.001G053800.1.p locus=Potri.001G053800 ID=Potri.001G053800.1.v4.1 annot-version=v4.1 ATGCAAATCCCACAACAACCACCACCACCGCCCTCCTCCTCCTCCACAAATGACAACACCAAAACCACACTCTTCATCATCCTAACCACCTCCTTTTTCT CCCTCCTTTTCATCTTCACCCTCTCCTCTTACTCCTTCAACACCTCCTCCTTATCCACCCATGGCCGGCCCGACCCGTATCTCTTCCCAAACCGCCAACC CACTTTCACAAAAATCCCTTCTGATCCAACCCCACCCTCTATCGCCTACTTGATATCCGGGTCCAAGGGTGATTTGGATCGGGTCCTTAGGCTTTTATAT GCCACTTACCACCCGAAAAACCAATACTTGCTCCACCTGGACCTCTCTGCTCCACAAACCGATCGTGATCAATTAGCTCTTAGTGTCCAATCAGTGCCTA TTTTTAAAGCTGCACAGAATGTGAATGTGATCGGGAAGGCTGATTTTGCTTACCCAAAAGGGTCTTCTACCATTTCAGCCACACTTCATGGCGCTGCTAT ATTGTTGAGGTTGCCAAAGAAATGGGATTGGTTTGTTAATCTTGGTGCTGCTGATTATCCACTTGTTACTCCAGATGATCTTCTTCACATTTTATCATAT TTGCCTAAAGATCTCAACTTTGTCAATCACTCGAGTTACATTGGCTGGAGAGAGTCTAGACAATTGAAGCCAATAATTGTTGATCCGGGGCTTTACTTGT CGGAGAAATCTGAGATGTTTTATGCTACTCAAAAGCGAGATTTGCCTAATTCTTTCAGGCTATTTACAGGAACTTCTTTTTCCTTTGCTAGTCGTAATTT GATAGAGCACTGCATCTTGGGTGTGGACAACCTTCCGAGGATCCTAATGATGTATTTATCAAATACACCTTCATCCCTAATCAATTATTTCCCAACAGTC ATATGCAATTCTCGTCAGTTCAATAGGACTGTCATAAACCATAACTTACAATATGTAGCCTTTGAGAAGCCTTCTAAGAAGGTGCCCCGCGCACTTAATT CTAGTGAATTTGATGCAATGATTCAGAGTGGAGCAGCCTTTGCCACTCAATTCAAGTTAGATGATCCTGTACTTGATCGCATTGACCAAGATGTTTTGGG ACGAAATCCTGGTGAAGTGGTGCCTGGTGGTTGGTGCTTGGGTGGTGAGCCTGGAAATATAACATGCTCAGCTTGGGGTGATGCTGATATTCTGAGGCCT GGCACTGGAGCAGCAAGACTTGAAAAACTAATTGTTAGATTGCTGTCGAATGGTGAATTTCACTCTCGTCAATGTATAGTTGAATGA
AA sequence Show only first row Show all	>Potri.001G053800.1 pacid=42788406 polypeptide=Potri.001G053800.1.p locus=Potri.001G053800 ID=Potri.001G053800.1.v4.1 annot-version=v4.1 MQIPQQPPPPPSSSSTNDNTKTTLFIILTTSFFSLLFIFTLSSYSFNTSSLSTHGRPDPYLFPNRQPTFTKIPSDPTPPSIAYLISGSKGDLDRVLRLLY ATYHPKNQYLLHLDLSAPQTDRDQLALSVQSVPIFKAAQNVNVIGKADFAYPKGSSTISATLHGAAILLRLPKKWDWFVNLGAADYPLVTPDDLLHILSY LPKDLNFVNHSSYIGWRESRQLKPIIVDPGLYLSEKSEMFYATQKRDLPNSFRLFTGTSFSFASRNLIEHCILGVDNLPRILMMYLSNTPSSLINYFPTV ICNSRQFNRTVINHNLQYVAFEKPSKKVPRALNSSEFDAMIQSGAAFATQFKLDDPVLDRIDQDVLGRNPGEVVPGGWCLGGEPGNITCSAWGDADILRP GTGAARLEKLIVRLLSNGEFHSRQCIVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24040			Core-2/I-branching beta-1,6-N-...		Potri.001G053800 [exp]	0	1
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G002600 [exp]	1.41	0.9044
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.016G080500 [exp]	3.00	0.9154
AT4G38040			Exostosin family protein (.1)		Potri.005G147500 [exp]	5.74	0.8593
AT3G27320			alpha/beta-Hydrolases superfam...		Potri.010G053700 [exp]	9.32	0.8367
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.001G278900 [exp]	10.95	0.8749	Pt-SIRANBP.1
AT1G52780			Protein of unknown function (D...		Potri.001G175600 [exp]	12.00	0.9005
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Potri.010G051500 [exp]	12.48	0.8652	ARP3.2
AT1G53710			Calcineurin-like metallo-phosp...		Potri.001G161100 [exp]	12.96	0.8392
AT5G42570			B-cell receptor-associated 31-...		Potri.011G007200 [exp]	13.41	0.8898
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Potri.001G047100 [exp]	14.83	0.8914	GOS11.1

Compare expression of checked genes

Potri.001G053800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.