Plant FIBer expression Database

Potri.001G054200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G57790 42 / 0.0007 F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G106750
[exp]
46 / 5e-05 AT1G57790 57 / 7e-09 F-box family protein (.1)
Potri.002G014500
[exp]
44 / 0.0001 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1)
Potri.006G015601
[exp]
43 / 0.0003 AT4G22660 59 / 3e-09 F-box family protein with a domain of unknown function (DUF295) (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03478 DUF295 Protein of unknown function (DUF295)
Representative CDS sequence
>Potri.001G054200.1 pacid=42787759 polypeptide=Potri.001G054200.1.p locus=Potri.001G054200 ID=Potri.001G054200.1.v4.1 annot-version=v4.1
ATGAATGCAAGAGTGTTGTTTCATCTGTATAGAAAGCTGGGAGAATATCTTTCTTGCAGTTTGCCATCCTTTATCAAGATGTTATTTTCCAATCGCTGCA
AAGACGATATTGGATTTGGTCAACCGGGAGTTCCAGAAGATGATAGGGTTATCATAGATGCCGTTCCTGATAAACTACCATGGCTACTCCTCCCCCACGA
CACGCAGTGTGAGTCCTTGAAGTTTTATGACCTATCGAGAAACAAGGTGCATGAACGCAATTTGCCAGAGGTATTGCTAGGAGGGGTGTCTGTTGAAGTA
TCCAAGGGTTGGTTGGCTATTGCCAAGGAAGGGAAATATATTCGCGATACAAAGTACTCGAGTTATCTCTCTTTTAAACCAATTCCTGACACAGAAATCT
ACCTTTTCAATCCACTTTCAGGAGCCATTCACCAACTTCCATCCCTATCAACTTTAGTTCCATATTACTATTCGTTTGTCATCAATTGTATTTTCAATAT
GGGAGGATTCAATGTCGCTGAGTTTATTCGTAGGGTTGAACTATCCTCTGCAGACCCTTCAAAATCCATCATTGCCTTGAGATTTAACGAGTTTGAAGCG
AACAACTGTGGGAATTTGGCGCTGTGTAGACTTGGGGACAAGTGTTGGAGCATCTTTCCCCGTGAAACTAATCGCGACATAGAGTTCCGTGATATCTTGT
TTTACAATGGAGATTTGTGCGTCTTATCACAAAAAATCGAACATGTTGAGACGCACATCTTTAAGTTGGCAGAGGATGATGAGGTGAGAATAAAGTTCAT
TCCAGTTTCGAATGCTGGTCGTAATCCGTTCATAGAGGTTGAACGTTTGAGACATGATATCGCCACCATTAAACATGTTTTCTATGAGCCGTATTTAGTC
GAATCAGTCAATGGTGAACTATTGATAATTCTTGCACATAACGTTTGTTATGTTTATCATGATGAAGACGAGCTGGAGGAGGAACGTTTGGATGAAGACG
AGCTGGAGGAGGAACGTTTGGATGAAGATGAGGACGACTTAGAAGAGGAACGTTTCGGTGAAGATGATGACGATCTTGAAAGTTTCTATGATGAAGAGGA
TGACATAGAAGAGGGTGATTTTGAGCGTTTCTATTGTAAAGTAGACGGCTTCAGTGTATACGAGGTGGGTCCTAACGCAGGCATGATCTTGCGTAGTGTG
CAGAGCTTAAGTGACCAATTGATCTTTTTGACATCTGGTGGCCGGTCAGTATCAGTTCCAGCAGAGAATTTGCCTTGCGGAATCCAAAGAAATTGCATTT
TCTTTCTAGAGAACGATAATTACTTCTCAGAAGTGTCTAGTGATGATCAGAAAAGAGAGGAAATGTTACTTCGTCGTGTGTCTCGTGAATCAGGAATATG
CTACCTGGAGAGCGGGAGAGTTGAGAGATTATTTCCTAGTTTCAATCGTCTGCTAAAGTGCAAGGTGGGCTGGTTCACACCATCTCCTTGA
AA sequence
>Potri.001G054200.1 pacid=42787759 polypeptide=Potri.001G054200.1.p locus=Potri.001G054200 ID=Potri.001G054200.1.v4.1 annot-version=v4.1
MNARVLFHLYRKLGEYLSCSLPSFIKMLFSNRCKDDIGFGQPGVPEDDRVIIDAVPDKLPWLLLPHDTQCESLKFYDLSRNKVHERNLPEVLLGGVSVEV
SKGWLAIAKEGKYIRDTKYSSYLSFKPIPDTEIYLFNPLSGAIHQLPSLSTLVPYYYSFVINCIFNMGGFNVAEFIRRVELSSADPSKSIIALRFNEFEA
NNCGNLALCRLGDKCWSIFPRETNRDIEFRDILFYNGDLCVLSQKIEHVETHIFKLAEDDEVRIKFIPVSNAGRNPFIEVERLRHDIATIKHVFYEPYLV
ESVNGELLIILAHNVCYVYHDEDELEEERLDEDELEEERLDEDEDDLEEERFGEDDDDLESFYDEEDDIEEGDFERFYCKVDGFSVYEVGPNAGMILRSV
QSLSDQLIFLTSGGRSVSVPAENLPCGIQRNCIFFLENDNYFSEVSSDDQKREEMLLRRVSRESGICYLESGRVERLFPSFNRLLKCKVGWFTPSP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G054200
[exp]
0 1
AT2G41760 unknown protein Potri.006G051500
[exp]
9.84 0.8478
AT1G12740 CYP87A2 "cytochrome P450, family 87, s... Potri.001G270800
[exp]
12.00 0.7988
AT3G45140 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGE... Potri.001G226904
[exp]
12.48 0.8112
Potri.012G059801
[exp]
20.32 0.7910
AT4G15620 Uncharacterised protein family... Potri.001G323700
[exp]
26.36 0.7951
AT2G20800 NDB4 NAD(P)H dehydrogenase B4 (.1) Potri.013G147300
[exp]
27.22 0.7342
AT2G35380 Peroxidase superfamily protein... Potri.001G145800
[exp]
31.49 0.7418
AT2G05940 RIPK RPM1-induced protein kinase, P... Potri.003G066300
[exp]
33.40 0.7935
AT3G26040 HXXXD-type acyl-transferase fa... Potri.008G180400
[exp]
37.78 0.7678
AT5G57090 MM31, ATPIN2, A... WAVY ROOTS 6, ETHYLENE INSENSI... Potri.001G205200
[exp]
38.88 0.7546 Pt-PIN2.1,PIN10

Potri.001G054200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.