Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172800 [exp] 96 / 7e-24 AT3G04280 76 / 2e-16 response regulator 22 (.1.2.3) Potri.003G177400 [exp] 92 / 2e-23 AT3G04280 99 / 9e-26 response regulator 22 (.1.2.3) Potri.001G050800 [exp] 82 / 7e-20 AT5G26594 77 / 4e-18 response regulator 24 (.1) Potri.003G172866 [exp] 85 / 8e-20 AT3G04280 85 / 2e-19 response regulator 22 (.1.2.3) Potri.003G177300 [exp] 82 / 9e-20 AT3G04280 96 / 8e-25 response regulator 22 (.1.2.3) Potri.001G050900 [exp] 62 / 5e-12 AT3G04280 83 / 4e-19 response regulator 22 (.1.2.3) Potri.003G172750 [exp] 57 / 2e-11 AT3G04280 80 / 1e-20 response regulator 22 (.1.2.3) Potri.001G051000 [exp] 55 / 1e-09 AT5G26594 82 / 7e-19 response regulator 24 (.1) Potri.019G024900 [exp] 47 / 2e-07 AT5G26594 121 / 2e-36 response regulator 24 (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G054301.1 pacid=42792841 polypeptide=Potri.001G054301.1.p locus=Potri.001G054301 ID=Potri.001G054301.1.v4.1 annot-version=v4.1 ATGAGGCGAGTTCTAGACAGTTTAATTACGGAAGAAATCAAACTATTAAATTATAAAGAAGCTATGGAATCAAGATTGAGTCTTCTTGACTCGGGCGATA CAAATCTTGAAGGCAGTCAGAAGATTGGTAATGTGAAGCAATGCTTGGTGCGTCACAAGGCACTCGTCACTGGTGATATTCTTGGAGACCCACATCAGGG TGTTTGCTATCTTTTCTATGTTTACAGGTATAATGTCTCTGTGTTTGTTGATGATTATTGTGCTGTTAGAGACACCAATACTCGGAGATTTAAGCTGTTA GCTGGGACACAAATGACAACGGATGTTCAAGAGGCCACTAATGGAAAAGAAGCTCTTTATCTTCATCTTGCTGGGTGTTCTTTTGATCTCGTTCTTATGG ACAATCAAATGGAATTCAGGAGAATTAGAAAAACACAGGAATGCTACTCTTGA
AA sequence Show only first row Show all	>Potri.001G054301.1 pacid=42792841 polypeptide=Potri.001G054301.1.p locus=Potri.001G054301 ID=Potri.001G054301.1.v4.1 annot-version=v4.1 MRRVLDSLITEEIKLLNYKEAMESRLSLLDSGDTNLEGSQKIGNVKQCLVRHKALVTGDILGDPHQGVCYLFYVYRYNVSVFVDDYCAVRDTNTRRFKLL AGTQMTTDVQEATNGKEALYLHLAGCSFDLVLMDNQMEFRRIRKTQECYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.001G054301 [exp]	0	1
AT3G17030			Nucleic acid-binding proteins ...		Potri.008G105850 [exp]	4.35	0.5921
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.005G092950 [exp]	4.47	0.6896
					Potri.008G113301 [exp]	5.19	0.6993
AT4G22300		SOBER1	SUPPRESSOR OF AVRBST-ELICITED ...		Potri.004G001701 [exp]	7.21	0.6508
AT1G79250		AGC1.7	AGC kinase 1.7 (.1.2)		Potri.010G175900 [exp]	8.66	0.6302
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Potri.019G013800 [exp]	8.94	0.6291
AT4G27790			Calcium-binding EF hand family...		Potri.015G010300 [exp]	15.49	0.5825
AT1G43760			DNAse I-like superfamily prote...		Potri.012G064001 [exp]	21.44	0.4461
AT5G47530			Auxin-responsive family protei...		Potri.019G096400 [exp]	22.97	0.5450
					Potri.008G012050 [exp]	24.26	0.4921

Compare expression of checked genes

Potri.001G054301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.