Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04630 263 / 5e-92 MEE4 maternal effect embryo arrest 4, GRIM-19 protein (.1) AT2G33220 261 / 2e-91 GRIM-19 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G173800 [exp] 279 / 1e-98 AT1G04630 261 / 3e-91 maternal effect embryo arrest 4, GRIM-19 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035237 [exp] 267 / 1e-93 AT2G33220 261 / 2e-91 GRIM-19 protein (.1) Lus10023693 [exp] 267 / 1e-93 AT2G33220 261 / 2e-91 GRIM-19 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06212 [poplar] [flax] GRIM-19 GRIM-19 protein
Representative CDS sequence Show only first row Show all	>Potri.001G054500.2 pacid=42793324 polypeptide=Potri.001G054500.2.p locus=Potri.001G054500 ID=Potri.001G054500.2.v4.1 annot-version=v4.1 ATGACGGAGGCAGTGATAAGAAACAAGCCAGGGATGGCAAGCGTGAAGGACATGCCTATCCTTCAAGACGGCCCTCCTCCTGGTGGTTTTGCTCCTGTCC GATTCGCTCGTAGGATCCCCAGCAAAGGTCCTAGTGCTATGGCCATCTTTCTCGCTGCTTTTGGTGCCTTTTCTTATGGCATGTACGAAGTCGGCAAGGG CAACAAGATCCGCAGGGCACTTAAGGAAGAGAAGTATGCTGCACGCAGGGCGATCCTGCCTCTGCTTCAAGCTGAAGAAGATGAAAGATTCGTCAAGGAG TGGAAGAAGTATCTTGAATACGAGGCAGATGTAATGAAGGATGTTCCTGGTTGGAAAGTTGGTGAAAGTGTCTATAATTCTGGGAGATGGATGCCCCCAG CAACTGGCGAGCTGCGTCCAGAGGTCTGGTGA
AA sequence Show only first row Show all	>Potri.001G054500.2 pacid=42793324 polypeptide=Potri.001G054500.2.p locus=Potri.001G054500 ID=Potri.001G054500.2.v4.1 annot-version=v4.1 MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRFARRIPSKGPSAMAIFLAAFGAFSYGMYEVGKGNKIRRALKEEKYAARRAILPLLQAEEDERFVKE WKKYLEYEADVMKDVPGWKVGESVYNSGRWMPPATGELRPEVW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04630		MEE4	maternal effect embryo arrest ...		Potri.001G054500 [exp]	0	1
AT1G22520			Domain of unknown function (DU...		Potri.013G105766 [exp]	1.00	0.8463
AT3G10860			Cytochrome b-c1 complex, subun...		Potri.013G159700 [exp]	5.65	0.7568
AT3G12587			Oligosaccaryltransferase (.1)		Potri.008G053300 [exp]	6.48	0.7897
AT5G19760			Mitochondrial substrate carrie...		Potri.003G220400 [exp]	10.19	0.7683
AT2G47690			NADH-ubiquinone oxidoreductase...		Potri.014G129600 [exp]	11.22	0.8085
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Potri.015G089600 [exp]	12.00	0.7870
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Potri.009G062200 [exp]	13.11	0.8087	Pt-ANT2.1
AT5G10160			Thioesterase superfamily prote...		Potri.003G020300 [exp]	13.41	0.7919
AT5G53650			unknown protein		Potri.012G022900 [exp]	15.16	0.8044
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.005G025100 [exp]	15.71	0.7547	Pt-RPT5.1

Compare expression of checked genes

Potri.001G054500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.