Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11860 380 / 2e-130 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT4G18140 191 / 2e-55 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT5G46410 190 / 6e-55 SSP4 SCP1-like small phosphatase 4 (.1.2) AT1G29770 101 / 5e-24 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 97 / 5e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 92 / 1e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G55960 64 / 7e-11 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43600 54 / 4e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19600 54 / 6e-08 AtCPL5 C-terminal domain phosphatase-like 5, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G17550 54 / 6e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G173700 [exp] 772 / 0 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.011G078300 [exp] 225 / 9e-68 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.001G353700 [exp] 226 / 2e-67 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.004G062900 [exp] 96 / 6e-22 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G072000 [exp] 87 / 7e-19 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G116700 [exp] 69 / 1e-12 AT3G55960 248 / 1e-81 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G100800 [exp] 68 / 2e-12 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 64 / 5e-11 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G188500 [exp] 63 / 1e-10 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015787 [exp] 520 / 0 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10037019 [exp] 426 / 3e-137 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10037018 [exp] 232 / 7e-73 AT5G11860 108 / 1e-27 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10004596 [exp] 218 / 3e-65 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2) Lus10025376 [exp] 210 / 2e-62 AT5G46410 343 / 2e-114 SCP1-like small phosphatase 4 (.1.2) Lus10004551 [exp] 166 / 1e-45 AT5G46410 286 / 8e-92 SCP1-like small phosphatase 4 (.1.2) Lus10007321 [exp] 94 / 4e-21 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 94 / 7e-21 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009890 [exp] 64 / 5e-11 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10014844 [exp] 64 / 8e-11 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Potri.001G054700.13 pacid=42789687 polypeptide=Potri.001G054700.13.p locus=Potri.001G054700 ID=Potri.001G054700.13.v4.1 annot-version=v4.1 ATGCAAACTAAGAAAAGAATTTGTGGAAGAAATGCTTCAAGAGAGCTTGCAAGTCCTAGGATTTCAAGAGCTCAGAAGAAACTGTCTGAAAATGTGCAAG TCGCAGAGAAAGTTTCAGAACTAATTACATCTTCAGCTAGAAAGCAGAAATGCACCCTTCCAATGAAAAATCAGGAGCCTATTGCAGCAACAAATTTGAA TACTAGATACAACTCGGTGCATCATAAGGCTTCTGATGCTTCAACTCGATGTGATGTGGTGGATCCTGAGGGCTGTAATGAAGGAGCTGCTCAATGTGTG GTTCAAGCTATATTTTCTCCTGCTTTTCACATATCTAAGATTGCTGGAGGAGAAATTCCTGATGGAGTTGACTTCACCAAACTGTATCGGACTGGAGAGT CCCGGGTTGATATGCTGGATGCTCATCTTACACAAGAAACCTTTAAACCCTTTTTTGGAGAACACAATGGGAGCACATTAACTTCCCTCAACACAACTTG TCATAGTGTCATAGAAGTGGAGAAAAATATATCAGCCAAAAACTCATATGTGGATAACTATGGTGATCAGGTGCTCTCTACTGATGCAACTACTGTGAAT TCTTGTGGTATTGCAGTTTCAAATGGAGTTGGTCTTCCTTCTGAAGTTTCATCTATATATCTTGCAATGAAGAACTCAAAACTGGAATGTGTTGATGAGC ATGGTCAAGATTCTATGTCGACTGATGTTTGCATGGAGGAGGAGGATTACGAGGAGTTTGATGACTTTGACCCTTATCTATTTATAAAGAACCTGCCAGA GTTGTCATCAGTAGTCCCCACTTTTCGGCCTATGCTGCTACCTAAACAGACACGGAGTTGTCCTCCTACAACTCTTGTTTTGGACCTGGATGAAACACTG GTGCACTCCACACTTGAACCTTGTGATGACGCGGACTTCACATTTCCTGTCAACTTTAACCTCCAGCAGCACACAGTCTTTGTTCGGTGCCGTCCTTACC TTAGAGATTTCATGGAGAGAGTTTCTAGTCTTTTTGAGATCATAATATTTACTGCTAGCCAAAGCATTTATGCAGAACAACTTCTAAATGTGCTTGATCC AAAGAGGAGAGTGTTTCGACATCGTGTTTTTCGTGAATCCTGTGTTTTTGTCGAGGGTAACTACCTCAAGGATTTGTCAGTTCTTGGTCGTGATTTGGCA CACGTTATTATAATTGACAACTCTCCCCAGGCATTTGGCTTCCAAGTAGACAATGGTATACCAATTGAGAGCTGGTTTGATGATCGTGCAGATAAAGAAT TGCTCTCACTACTTCCATTTTTGGAGAGCTTGGTTGGGGTCGAAGATGTTAGGCCAGTGATTGCAAAGAAATACAATCTTCGGCGGAGAATTGCTTCAGC TGCTTACCCTCTATTGAATTCAAGTAGAGATCCTTTTGAAAGGTAG
AA sequence Show only first row Show all	>Potri.001G054700.13 pacid=42789687 polypeptide=Potri.001G054700.13.p locus=Potri.001G054700 ID=Potri.001G054700.13.v4.1 annot-version=v4.1 MQTKKRICGRNASRELASPRISRAQKKLSENVQVAEKVSELITSSARKQKCTLPMKNQEPIAATNLNTRYNSVHHKASDASTRCDVVDPEGCNEGAAQCV VQAIFSPAFHISKIAGGEIPDGVDFTKLYRTGESRVDMLDAHLTQETFKPFFGEHNGSTLTSLNTTCHSVIEVEKNISAKNSYVDNYGDQVLSTDATTVN SCGIAVSNGVGLPSEVSSIYLAMKNSKLECVDEHGQDSMSTDVCMEEEDYEEFDDFDPYLFIKNLPELSSVVPTFRPMLLPKQTRSCPPTTLVLDLDETL VHSTLEPCDDADFTFPVNFNLQQHTVFVRCRPYLRDFMERVSSLFEIIIFTASQSIYAEQLLNVLDPKRRVFRHRVFRESCVFVEGNYLKDLSVLGRDLA HVIIIDNSPQAFGFQVDNGIPIESWFDDRADKELLSLLPFLESLVGVEDVRPVIAKKYNLRRRIASAAYPLLNSSRDPFER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Potri.001G054700 [exp]	0	1
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Potri.017G144121 [exp]	7.48	0.7299
AT2G44580			zinc ion binding (.1)		Potri.001G346900 [exp]	10.53	0.6984
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.004G124000 [exp]	42.74	0.6425	ATHMG.2
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.010G217900 [exp]	46.81	0.6536
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Potri.010G001400 [exp]	81.28	0.5805
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Potri.004G095000 [exp]	104.88	0.6327
AT5G49880			mitotic checkpoint family prot...		Potri.003G000900 [exp]	120.64	0.6187
AT1G55340			Protein of unknown function (D...		Potri.003G221000 [exp]	192.14	0.5714

Compare expression of checked genes

Potri.001G054700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.