Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74110 502 / 6e-174 CYP78A10 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) AT1G13710 480 / 1e-165 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT1G01190 462 / 5e-158 CYP78A8 "cytochrome P450, family 78, subfamily A, polypeptide 8", cytochrome P450, family 78, subfamily A, polypeptide 8 (.1) AT2G46660 461 / 5e-158 CYP78A6 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) AT3G61880 457 / 3e-156 CYP78A9 cytochrome p450 78a9 (.1.2) AT5G09970 446 / 9e-152 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT5G07990 269 / 2e-83 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45550 244 / 6e-74 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45570 233 / 1e-69 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 231 / 2e-69 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G173500 [exp] 880 / 0 AT1G74110 491 / 3e-170 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.005G200400 [exp] 483 / 3e-166 AT5G09970 681 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G084500 [exp] 477 / 6e-164 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.002G060900 [exp] 477 / 7e-164 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.014G102700 [exp] 476 / 2e-163 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G083900 [exp] 469 / 6e-161 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.007G081200 [exp] 468 / 3e-160 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.003G146800 [exp] 464 / 6e-159 AT2G46660 659 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G175200 [exp] 461 / 1e-157 AT2G46660 694 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015788 [exp] 643 / 0 AT1G13710 471 / 1e-163 KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) Lus10017334 [exp] 476 / 2e-163 AT3G61880 656 / 0.0 cytochrome p450 78a9 (.1.2) Lus10005995 [exp] 467 / 6e-160 AT2G46660 708 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10005780 [exp] 461 / 2e-157 AT5G09970 696 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10036627 [exp] 455 / 3e-155 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10030216 [exp] 454 / 4e-155 AT2G46660 697 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10035844 [exp] 446 / 1e-151 AT5G09970 729 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10001670 [exp] 415 / 1e-139 AT2G46660 588 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10028897 [exp] 255 / 5e-78 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10021620 [exp] 247 / 7e-75 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G054800.1 pacid=42791570 polypeptide=Potri.001G054800.1.p locus=Potri.001G054800 ID=Potri.001G054800.1.v4.1 annot-version=v4.1 ATGACAAACGTCTTTCTCTACACAATTCTAATTGCTTTTCTTCAAAGAAAGACCCTTTTTTGGCAATCAATCATCACCTCCAAATTAACAGTTTCAGAAA TGATGTCCTTGCTAGCCAACCTTTCTTTCTTGCTCTTTTTCCTGGCCATCATCACCCACCAAACTCCATGGCCTATCACTGTCCTTTTACTCTCATTATT CTCTTCTTTTGCTCTCTCTATAAACTATTGGTTAGTCCCTGGAGGTTTTGCATGGAGAAACCATCACGACAATCAAAACCCTTCAAAGTTCCGGGGTCCA ATTGGCTGGCCTGTATTCGGCACTCTACCTCAAATGGGTTCACTTGCTCATCGAAAACTAGCTAGCATGGCTACCTCGTTAGGTGCAACTAAGCTTATGG CATTTAGTCTAGGCACAACTCGTGTGATCATTAGTAGCCACCCAGACACGGCCAGGGAAATCCTATGGGGGTCTTCTTTCGCTGACCGTCCTGTAAAGGA ATCAGCTCGTTTGTTAATGTTTGAGCGTGCCATTGGCTTTGCTCCATCCGGGGACTATTGGCGACACTTACGTAGAATTGCTGCAAATCATATGTTTTCC CCTAAGAAAATCTCTGGTCTAGAGCCACTTAGGCAACGTTTAGCTAATGAAATGTTGGCGGAAGTGAGTGGGGAGATGAAGGAGAGACGGGCTGTTGTGC TAAGAGGGATATTACAAAAAAGTTCATTAAGCAATGTACTGGAGAGTGTTCTTGGCAGTGATGTCCATGTAAAAAGGGAGGAGTTAGGGTTCATGGCTCA AGAAGGATTTGACTTGGTTTCAAGATTTAATTTGGAGGACTATTTTCCACTAAGGTTTTTAGACTTTTATGGGGTGAAGAGAAGGTGTTATAAGCTGGCT GGCAAGGTCAATAGTCTTGTGGGTCAAATTGTGAGGGAAAGAAAAAGAGCTGGAGACTTCAGGAGTCGTACTGACTTTCTTAGTGCTTTGTTGTCTTTGC CCGAGCAAGAGCGGTTGGACGAATCAGATATGGTTCCTCTTTTGTGGGAGATGATATTTCGAGGAACAGACACAGTTGCTATACTTCTCGAGTGGATCAT GGCGAGGATGGTGTTGCACCCAGAGATCCAAGCTAAGGCCCAGCAAGAGCTTGAAAAGTTCATCGGCAATCACAGGCGAGTGCAAGATTCTGACATCCCT AATCTACCCTACCTCCAAGCAATAGTCAAGGAAGTCCTACGACTGCACCCACCTGGCCCACTTCTCTCGTGGGCCCGCCTTGCCATCCATGATGTGCACG TGGACAAAATGTCTATCCCAGCTGGCACAACAGCAATGGTCAACATGTGGGCCATAACACACGACCCGTCCATTTGGAGGGATCCGTGGGCCTTCAATCC AGACCGGTTCATGGAAGAGGATGTGTTGATAATGGGTTCAGACTTGAGGCTTGCACCTTTCGGGTCAGGGCGCAGGGTGTGTCCAGGCAAGGCACTTGGG TTAGCCACGGTGCACCTCTGGCTAGCACGGCTTTTACACGAGTACAAGTGGCTACCCGCCAAGCCTGTGGATCTTTCCGAGTGTTTGAGGCTCTCTCTCG AAATGAAAAGGCCACTGGAATGCCATGTGGTTCCATGGAGCAAAGTTGCCGATTTTGATCAGAAAACTTAG
AA sequence Show only first row Show all	>Potri.001G054800.1 pacid=42791570 polypeptide=Potri.001G054800.1.p locus=Potri.001G054800 ID=Potri.001G054800.1.v4.1 annot-version=v4.1 MTNVFLYTILIAFLQRKTLFWQSIITSKLTVSEMMSLLANLSFLLFFLAIITHQTPWPITVLLLSLFSSFALSINYWLVPGGFAWRNHHDNQNPSKFRGP IGWPVFGTLPQMGSLAHRKLASMATSLGATKLMAFSLGTTRVIISSHPDTAREILWGSSFADRPVKESARLLMFERAIGFAPSGDYWRHLRRIAANHMFS PKKISGLEPLRQRLANEMLAEVSGEMKERRAVVLRGILQKSSLSNVLESVLGSDVHVKREELGFMAQEGFDLVSRFNLEDYFPLRFLDFYGVKRRCYKLA GKVNSLVGQIVRERKRAGDFRSRTDFLSALLSLPEQERLDESDMVPLLWEMIFRGTDTVAILLEWIMARMVLHPEIQAKAQQELEKFIGNHRRVQDSDIP NLPYLQAIVKEVLRLHPPGPLLSWARLAIHDVHVDKMSIPAGTTAMVNMWAITHDPSIWRDPWAFNPDRFMEEDVLIMGSDLRLAPFGSGRRVCPGKALG LATVHLWLARLLHEYKWLPAKPVDLSECLRLSLEMKRPLECHVVPWSKVADFDQKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74110		CYP78A10	"cytochrome P450, family 78, s...		Potri.001G054800 [exp]	0	1
					Potri.008G159600 [exp]	2.82	0.8837
AT1G54570			Esterase/lipase/thioesterase f...		Potri.005G046700 [exp]	3.16	0.9281
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.008G165600 [exp]	3.74	0.8837
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.005G249200 [exp]	4.00	0.9249	Pt-FTSH2.1
AT1G52855			unknown protein		Potri.011G124800 [exp]	8.66	0.9195
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048900 [exp]	15.19	0.8743
AT1G16720		HCF173	high chlorophyll fluorescence ...		Potri.007G003500 [exp]	16.88	0.8988
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.011G142800 [exp]	16.97	0.8610	Pt-TPS1.6
AT4G17670			Protein of unknown function (D...		Potri.001G148700 [exp]	19.18	0.7882
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033600 [exp]	20.78	0.8863

Compare expression of checked genes

Potri.001G054800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.