Plant FIBer expression Database

Potri.001G054850 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G054850.1 pacid=42787608 polypeptide=Potri.001G054850.1.p locus=Potri.001G054850 ID=Potri.001G054850.1.v4.1 annot-version=v4.1
ATGATTTTCTTTTGCCGCTGCAGGTCCACCGCATTCTCTTATTGGTATGTAGTGGTGGGGGCTAAGCTGGCAGATTCATGGTGGACACCTTTCTATGAGT
GGAGAGAAATCTCACTACAATTAAGAACGGAAGAGATAGTGGGTGTGTGCATGCTGAAGACATATGATTTGTGGCCTAGTAGAGCGACTATGGTGGGGAT
TTCTCCCCCCTTCTTCAAGGAGGGACTATCGCAGACTCGCAGTGTTTGTCTATTTTCAATTTACTTGATCGATCCTTGGTTGTTCTTGCATGTATTGTGC
CTGCAATTCAAGTCCCATTTTGCTTTAAAACTTGCTGGGACCACACCATACACACAGCTTTTGATCATGTCATGA
AA sequence
>Potri.001G054850.1 pacid=42787608 polypeptide=Potri.001G054850.1.p locus=Potri.001G054850 ID=Potri.001G054850.1.v4.1 annot-version=v4.1
MIFFCRCRSTAFSYWYVVVGAKLADSWWTPFYEWREISLQLRTEEIVGVCMLKTYDLWPSRATMVGISPPFFKEGLSQTRSVCLFSIYLIDPWLFLHVLC
LQFKSHFALKLAGTTPYTQLLIMS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G054850
[exp]
0 1
AT1G76770 HSP20-like chaperones superfam... Potri.002G067700
[exp]
9.11 0.8388
AT1G56170 CCAAT NF-YC2, ATHAP5B... "nuclear factor Y, subunit C2"... Potri.007G070900
[exp]
20.39 0.7478
AT1G03990 Long-chain fatty alcohol dehyd... Potri.002G259700
[exp]
21.16 0.7059
AT5G07330 unknown protein Potri.012G111000
[exp]
22.58 0.7708
AT5G58590 RANBP1 RAN binding protein 1 (.1) Potri.006G102400
[exp]
26.38 0.7411
AT1G77840 Translation initiation factor ... Potri.004G093600
[exp]
29.15 0.7598
AT1G66510 AAR2 protein family (.1.2.3) Potri.017G123900
[exp]
39.19 0.7530
Potri.001G076050
[exp]
50.28 0.7453
AT2G24130 Leucine-rich receptor-like pro... Potri.001G042500
[exp]
50.69 0.7431
AT4G19450 Major facilitator superfamily ... Potri.003G105600
[exp]
71.84 0.6378

Potri.001G054850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.