Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TOM20.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27390 230 / 4e-77 TOM20-2 translocase outer membrane 20-2 (.1) AT3G27080 220 / 3e-73 TOM20-3 translocase of outer membrane 20 kDa subunit 3 (.1) AT5G40930 194 / 3e-63 TOM20-4 translocase of outer membrane 20-4 (.1) AT3G27070 169 / 1e-53 TOM20-1 translocase outer membrane 20-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G173400 [exp] 345 / 1e-122 AT3G27080 208 / 2e-68 translocase of outer membrane 20 kDa subunit 3 (.1) Potri.001G330200 [exp] 241 / 9e-82 AT1G27390 215 / 3e-71 translocase outer membrane 20-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012532 [exp] 255 / 2e-80 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10035211 [exp] 226 / 5e-75 AT3G27080 210 / 1e-68 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10032045 [exp] 224 / 3e-74 AT3G27080 211 / 2e-69 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10011363 [exp] 179 / 4e-57 AT3G27080 180 / 1e-57 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10006419 [exp] 174 / 4e-55 AT3G27080 180 / 1e-57 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10041558 [exp] 84 / 3e-20 AT3G27080 83 / 5e-20 translocase of outer membrane 20 kDa subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF06552 [poplar] [flax] TOM20_plant Plant specific mitochondrial import receptor subunit TOM20
Representative CDS sequence Show only first row Show all	>Potri.001G054900.1 pacid=42790781 polypeptide=Potri.001G054900.1.p locus=Potri.001G054900 ID=Potri.001G054900.1.v4.1 annot-version=v4.1 ATGGAGTTCTCTCAAGATGACTTCGATCGTCTCTTAATGTTCGAGCACGCTCGTAAAACCGCTGAAGCTACCTACGCTAGAGACCCTCTCGATGCCACAA ACTTGACTAAGTGGGGTGAGGCATTGCTGGAATTATCGCAATTTCAAACTGTGGCAGAGGCAAAGAAGATGATAAATGATGCCATTTCAAAGTTGGAAGA GGCATTGATGTTAAATCCAACATCCAATGCCATGTGGTCTATAGGAAATGCCAATACTTCTTATGCATTTCTGACTCCTGATCTTGACGAAGCTAAAAGT TATTTCGACAAGGCAGCTAATTATTTCCAACAAGCAGTTGATGAGGATCCAAACAACGAGCTTTATCGTAAGTCTTTGGAAGTTTGCGCTAAGGCTCCAG AATTACATACGGAGATCCATAAGCATTCAAGCAGTCAACAGATTATGGGTGGGGGGGGTTCTACTGCTTCTTCAAATGCAAAGGGCTCCAAGAAGAAGAC AAACAGTGATCTGAAGTATGATATATTTGGATGGATTATCCTTGCAGTTGGCATCGTTGCTTGGGTGGGGATGGCGAAATCCAATGTTCCTCCTCCTCCA AGATAA
AA sequence Show only first row Show all	>Potri.001G054900.1 pacid=42790781 polypeptide=Potri.001G054900.1.p locus=Potri.001G054900 ID=Potri.001G054900.1.v4.1 annot-version=v4.1 MEFSQDDFDRLLMFEHARKTAEATYARDPLDATNLTKWGEALLELSQFQTVAEAKKMINDAISKLEEALMLNPTSNAMWSIGNANTSYAFLTPDLDEAKS YFDKAANYFQQAVDEDPNNELYRKSLEVCAKAPELHTEIHKHSSSQQIMGGGGSTASSNAKGSKKKTNSDLKYDIFGWIILAVGIVAWVGMAKSNVPPPP R

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27390		TOM20-2	translocase outer membrane 20-...		Potri.001G054900 [exp]	0	1	Pt-TOM20.1
AT1G03330			Small nuclear ribonucleoprotei...		Potri.004G219000 [exp]	1.41	0.8399
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Potri.010G084800 [exp]	2.64	0.8221	PBD2.2
AT5G06360			Ribosomal protein S8e family p...		Potri.006G203400 [exp]	2.82	0.8279
AT5G46160			Ribosomal protein L14p/L23e fa...		Potri.010G022800 [exp]	3.87	0.8268	RPL14.1
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Potri.016G087900 [exp]	4.47	0.8156
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.006G253100 [exp]	4.58	0.8464
AT1G09810		ECT11	evolutionarily conserved C-ter...		Potri.004G223800 [exp]	7.14	0.7910
AT5G64680			unknown protein		Potri.001G068500 [exp]	11.48	0.8120
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.018G028600 [exp]	12.36	0.8283
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Potri.017G101200 [exp]	14.38	0.7790

Compare expression of checked genes

Potri.001G054900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.