Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43250 145 / 1e-45 CCAAT NF-YC13 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1) AT1G07980 56 / 3e-10 CCAAT NF-YC10 "nuclear factor Y, subunit C10", nuclear factor Y, subunit C10 (.1) AT3G12480 55 / 1e-09 CCAAT NF-YC11 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) AT5G63470 51 / 3e-08 CCAAT NF-YC4 "nuclear factor Y, subunit C4", nuclear factor Y, subunit C4 (.1.2) AT3G48590 50 / 4e-08 CCAAT NF-YC1, ATHAP5A, HAP5A "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) AT5G50480 49 / 1e-07 CCAAT NF-YC6 "nuclear factor Y, subunit C6", nuclear factor Y, subunit C6 (.1) AT1G54830 48 / 3e-07 CCAAT NF-YC3 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) AT1G08970 48 / 4e-07 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) AT5G50490 46 / 1e-06 CCAAT NF-YC5 "nuclear factor Y, subunit C5", nuclear factor Y, subunit C5 (.1) AT5G19490 46 / 2e-06 CCAAT Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G097400 [exp] 51 / 3e-08 AT3G48590 314 / 3e-109 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.012G098500 [exp] 50 / 7e-08 AT3G48590 265 / 4e-90 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.003G192100 [exp] 49 / 2e-07 AT3G12480 224 / 4e-72 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.001G033200 [exp] 49 / 2e-07 AT3G12480 221 / 7e-71 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.005G035800 [exp] 49 / 2e-07 AT1G08970 246 / 5e-82 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.013G025000 [exp] 48 / 3e-07 AT1G08970 252 / 6e-85 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.007G070900 [exp] 48 / 3e-07 AT1G56170 235 / 3e-78 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.008G203500 [exp] 48 / 3e-07 AT1G08970 241 / 2e-80 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.005G094900 [exp] 48 / 4e-07 AT1G56170 242 / 5e-81 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030832 [exp] 159 / 6e-51 AT5G43250 147 / 3e-46 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1) Lus10030657 [exp] 159 / 9e-51 AT5G43250 142 / 2e-44 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1) Lus10006169 [exp] 63 / 1e-12 AT1G22380 172 / 3e-51 UDP-glucosyl transferase 85A3 (.1) Lus10016750 [exp] 50 / 6e-08 AT3G48590 298 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10022444 [exp] 50 / 1e-07 AT3G48590 300 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10026780 [exp] 49 / 2e-07 AT5G19490 189 / 1e-58 Histone superfamily protein (.1) Lus10021934 [exp] 48 / 5e-07 AT1G08970 250 / 5e-84 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10041221 [exp] 47 / 6e-07 AT1G08970 248 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10029939 [exp] 46 / 2e-06 AT1G08970 243 / 3e-81 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10004468 [exp] 46 / 2e-06 AT1G08970 249 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF00808 [poplar] [flax] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Potri.001G055000.1 pacid=42790035 polypeptide=Potri.001G055000.1.p locus=Potri.001G055000 ID=Potri.001G055000.1.v4.1 annot-version=v4.1 ATGGTAGAATCAGAGGAGAACAAGACAGAAACAACAACAACCCGACCCGAATTCCCAACAGGCCGGATCAAGAGAATCATGAAACTTGACAAAGACACCA ACAAGGTCAATGCAGATGCTCTATTCCTCGTTTCCAGCTCCACCGAGTTGTTTCTCCGGTTCCTCGCGGAGAAATCAGCAGAAGTTGCAATCGAGAAGAA GCGAAAGATTGTGAAACTCGATCACATCCGAGCCGCTGTTAAAAGACACCACCCTACCAGTGATTTTCTCTTAGATTCGCTTCCTTTGCCAGCTCAGTCA TCAGAGAAGCCTGCAAGTGATAATACCAGTGCTCGCACCGTGACTGATAAACCAGCCCCGGCTGGCACGCGCCGGATTGATCAGTTTTTCGCTAAGGCGG CAAGTGAAGAAGTTCCGGTTCTGATAAATGAGTCCTAA
AA sequence Show only first row Show all	>Potri.001G055000.1 pacid=42790035 polypeptide=Potri.001G055000.1.p locus=Potri.001G055000 ID=Potri.001G055000.1.v4.1 annot-version=v4.1 MVESEENKTETTTTRPEFPTGRIKRIMKLDKDTNKVNADALFLVSSSTELFLRFLAEKSAEVAIEKKRKIVKLDHIRAAVKRHHPTSDFLLDSLPLPAQS SEKPASDNTSARTVTDKPAPAGTRRIDQFFAKAASEEVPVLINES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Potri.001G055000 [exp]	0	1
					Potri.012G031250 [exp]	1.00	0.9674
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Potri.016G098600 [exp]	2.44	0.9310	XTH32.2
AT2G36985		DVL16, ROT4	ROTUNDIFOLIA4, DEVIL 16, DVL f...		Potri.006G125600 [exp]	4.47	0.9304	Pt-ROT4.1
AT5G55690	MADS		MADS-box transcription factor ...		Potri.012G109900 [exp]	7.21	0.8289
AT1G12350		ATCOAB	4-phospho-panto-thenoylcystein...		Potri.005G170600 [exp]	7.34	0.8580
AT2G29125		RTFL2, DVL13	DEVIL 13, ROTUNDIFOLIA like 2 ...		Potri.009G034300 [exp]	7.74	0.8709
					Potri.003G076700 [exp]	7.93	0.8886
					Potri.011G020275 [exp]	10.81	0.8695
					Potri.017G124901 [exp]	18.33	0.8256
					Potri.010G190900 [exp]	20.00	0.8597

Compare expression of checked genes

Potri.001G055000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.