Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27920 623 / 0 MAP65-8 microtubule-associated protein 65-8 (.1) AT5G55230 438 / 5e-147 ATMAP65-1 microtubule-associated proteins 65-1 (.1.2) AT4G26760 406 / 7e-135 MAP65-2 microtubule-associated protein 65-2 (.1) AT2G01910 364 / 3e-118 ATMAP65-6 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) AT1G14690 347 / 9e-112 MAP65-7 microtubule-associated protein 65-7 (.1.2) AT5G51600 340 / 9e-108 ATMAP65-3, PLE PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) AT2G38720 328 / 2e-104 MAP65-5 microtubule-associated protein 65-5 (.1) AT5G62250 280 / 2e-86 MAP65-9 microtubule-associated protein 65-9 (.1) AT3G60840 279 / 5e-85 MAP65-4 microtubule-associated protein 65-4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G173300 [exp] 926 / 0 AT1G27920 655 / 0.0 microtubule-associated protein 65-8 (.1) Potri.011G092500 [exp] 426 / 2e-142 AT5G55230 863 / 0.0 microtubule-associated proteins 65-1 (.1.2) Potri.001G356500 [exp] 423 / 3e-141 AT5G55230 853 / 0.0 microtubule-associated proteins 65-1 (.1.2) Potri.003G192400 [exp] 367 / 1e-119 AT2G38720 555 / 0.0 microtubule-associated protein 65-5 (.1) Potri.008G139700 [exp] 353 / 9e-114 AT2G01910 778 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Potri.015G131400 [exp] 356 / 1e-113 AT5G51600 728 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.012G129600 [exp] 351 / 1e-111 AT5G51600 761 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.014G070100 [exp] 335 / 2e-105 AT5G51600 451 / 5e-149 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.006G269800 [exp] 129 / 5e-35 AT5G51600 186 / 2e-56 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015789 [exp] 680 / 0 AT1G27920 673 / 0.0 microtubule-associated protein 65-8 (.1) Lus10043178 [exp] 429 / 6e-142 AT5G55230 847 / 0.0 microtubule-associated proteins 65-1 (.1.2) Lus10032567 [exp] 424 / 2e-140 AT5G55230 850 / 0.0 microtubule-associated proteins 65-1 (.1.2) Lus10031939 [exp] 367 / 5e-119 AT2G01910 838 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Lus10035099 [exp] 366 / 1e-118 AT2G01910 822 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Lus10015684 [exp] 360 / 8e-115 AT5G51600 759 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Lus10026114 [exp] 354 / 2e-114 AT2G38720 553 / 0.0 microtubule-associated protein 65-5 (.1) Lus10008705 [exp] 351 / 2e-113 AT2G38720 565 / 0.0 microtubule-associated protein 65-5 (.1) Lus10037691 [exp] 354 / 9e-113 AT5G51600 768 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Lus10041635 [exp] 322 / 2e-102 AT2G38720 550 / 0.0 microtubule-associated protein 65-5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03999 [poplar] [flax] MAP65_ASE1 Microtubule associated protein (MAP65/ASE1 family)
Representative CDS sequence Show only first row Show all	>Potri.001G055100.2 pacid=42788593 polypeptide=Potri.001G055100.2.p locus=Potri.001G055100 ID=Potri.001G055100.2.v4.1 annot-version=v4.1 ATGTGGATATCTACTTCAGGAATTGCAGGCAAGACTGCCTCTTGGAAATCAATGATATTAATTTATCAATCAATAACAGCATTGCTTTTTTCTTCACGAT CTCTTTCCCTTCCTCTTAATATGAAACAGATGATATGGGAAGAAGTTGGGGAAGATCAGTTTGAACGAGAGAAGGTCCTGCTGGATTTAGAACAAGAGTG CTTAGAGGTTTATAGGAGAAAAGTTGACAATGCAAACATATCAAGAGCTCGCCTGCATCAAGAGCTGGCGGAATCTGAAGCTGAATTCACCCATCTTCTT CTGTCCCTTGGTGAACGATCACTCCCAGGACGGCCAGAAAGAAAGTCAGGAACACTGAAGGAGCAGCTAGATGCGATCACCCCAGCTCTACGGGAGATGC GTTTGAGAAAAGAAGAGAGGGTGAATCAATTTAGATCTGTGCAAGGTCAAATTCAAAAAATTTCTGCAGAAATTGCAGGTCAATCAGTGTACGATGACCC GATAACAAATGTCAAGGTAAATGAGAATGATCTTTCATTAAAGAAACTTGAGGAATACCAAATTGAGCTACAAAGGCTGCACAATGAGAAGAATGACAGG CTCCAGCTAGTGGACACATATATTGACACAATCCATGATTTGTCCTCAACATTAGGAATGGAATCCTCCATGATCATAACAAAGGTGCATCCAACTTTGA ATGAATTGTGTGGAATATCAAAAAATATAAGTGACAGTATTCTGGATAAACTCAACAGCACTGTGGAATCTCTCAAAGAAGAAAAACAAAAGCGGCTTGA GAAGCTTCATCAGCTTGGAAAGGCACTGAAAAACTTGTGGAATCTAATGGACACGCCCTATAAAGATTGTCACTCATTTTCCAATGTCACGGACTTATTA TTTCTCTCATCAGATGAAGTATCAGGTCCTGGAAGCCTTGCTCTAAATATAATCCAGCAGGCTGAAGCTGAAGTCAAGAGACTGGATCAGCTAAAAGCAA GCAAGATGAAAGAGCTTTTTTTCAAGAAACAGAGTGAGTTGGATCAAATATGCAATAAATCACACATGGAGATCCCTTCACAACCAGAGATGGAAAATAT AATAAATCTTATAAACTTGGGGGAGATTGACCATGCCGATCTCCTCATGAGCTTGGATGAGCAGATATCAAGAGCAAAAGAGGAAGCTTCTAGCAGGAAG GCTATAATGGAAAAGGTTGAAAAGTGGATATTAGCACGTGATGAAGAGCGCTGGTTAGAAGAATACAGCATGGACGAGAATCGATATTCAGTTCGCAGAG GTGCTCATAAGAATCTGCAACGTGCAGAACGTGCCCGGGTAATAGTCAACAAGATCCCAGTTCTAGTGGCATCGCTCGTAGCAAAGACTGAGAGTTGGGA AGAGGAAAGAAACAAAGTATTCCTGTATGATGGAGTACCCCTGCTGGCAATGCTGGAAGAGTATAACATATCGAGGCAGGAGATGGAAGAGGAAAAGCAA AGACAAAGGGCTAGTTCATCCAACACTCTACAGGCAAAGGAAAAGAAGGTCCCAAGCCATGTAGAAGTTGAGCAAGAAAATTTGATCGGGTCAAGCTCAA GGCCAAGCACCAGCAGTCGACGTCTTTCAAACAAGAGCTTGAATGGAGGATTTAGCAATGCAACGCCTTTAAACAGAAGGCTTTCTCTTGGTCCCAGACA GCTGGGAACCAACAGCATCAATTCTGCAAATCAAGGAATATCTTACATAAAGGAAGGAAGAAAAATTCAGGGGCAAAAGATGTTTCTTCGACCTGACCTC TCTTCTCATCTTCGAGATGAAGCAGCTTCAGTTGTCTCATCATTTTCTGGGCCATTATCTCCCTGA
AA sequence Show only first row Show all	>Potri.001G055100.2 pacid=42788593 polypeptide=Potri.001G055100.2.p locus=Potri.001G055100 ID=Potri.001G055100.2.v4.1 annot-version=v4.1 MWISTSGIAGKTASWKSMILIYQSITALLFSSRSLSLPLNMKQMIWEEVGEDQFEREKVLLDLEQECLEVYRRKVDNANISRARLHQELAESEAEFTHLL LSLGERSLPGRPERKSGTLKEQLDAITPALREMRLRKEERVNQFRSVQGQIQKISAEIAGQSVYDDPITNVKVNENDLSLKKLEEYQIELQRLHNEKNDR LQLVDTYIDTIHDLSSTLGMESSMIITKVHPTLNELCGISKNISDSILDKLNSTVESLKEEKQKRLEKLHQLGKALKNLWNLMDTPYKDCHSFSNVTDLL FLSSDEVSGPGSLALNIIQQAEAEVKRLDQLKASKMKELFFKKQSELDQICNKSHMEIPSQPEMENIINLINLGEIDHADLLMSLDEQISRAKEEASSRK AIMEKVEKWILARDEERWLEEYSMDENRYSVRRGAHKNLQRAERARVIVNKIPVLVASLVAKTESWEEERNKVFLYDGVPLLAMLEEYNISRQEMEEEKQ RQRASSSNTLQAKEKKVPSHVEVEQENLIGSSSRPSTSSRRLSNKSLNGGFSNATPLNRRLSLGPRQLGTNSINSANQGISYIKEGRKIQGQKMFLRPDL SSHLRDEAASVVSSFSGPLSP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.001G055100 [exp]	0	1
AT5G48940			Leucine-rich repeat transmembr...		Potri.005G188700 [exp]	1.00	0.9648
AT5G35960			Protein kinase family protein ...		Potri.014G136300 [exp]	1.41	0.9509
AT4G33080			AGC (cAMP-dependent, cGMP-depe...		Potri.006G224800 [exp]	1.73	0.9506
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Potri.001G112200 [exp]	2.00	0.9432	KNAT7.1
AT1G19835			Plant protein of unknown funct...		Potri.005G237100 [exp]	2.64	0.9318
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Potri.013G066200 [exp]	3.00	0.9237
AT1G79420			Protein of unknown function (D...		Potri.010G174200 [exp]	3.87	0.9364
					Potri.005G078900 [exp]	4.89	0.9259
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.006G015700 [exp]	5.83	0.8954
AT2G40270			Protein kinase family protein ...		Potri.001G280200 [exp]	8.00	0.8961

Compare expression of checked genes

Potri.001G055100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.