Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67370 700 / 0 ASY1, ATASY1 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) AT4G32200 236 / 3e-66 ASY2 DNA-binding HORMA family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G173200 [exp] 950 / 0 AT1G67370 746 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037019 [exp] 684 / 0 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10030933 [exp] 680 / 0 AT1G67370 655 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10015786 [exp] 670 / 0 AT1G67370 600 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10040113 [exp] 650 / 0 AT1G67370 626 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0651 [poplar] [flax] Mad2 PF02301 [poplar] [flax] HORMA HORMA domain
Representative CDS sequence Show only first row Show all	>Potri.001G055201.1 pacid=42787928 polypeptide=Potri.001G055201.1.p locus=Potri.001G055201 ID=Potri.001G055201.1.v4.1 annot-version=v4.1 ATGGTTGTTGCACAGAAAGTGAAAGAAGCTGAGATCACCCAGCAGGACTCGCTTCTTCTGACAAGGAACCTGCTCCGTATTGCTATATTCAACATCAGTT ACATCAGAGGCTTGTTTCCAGAGAAGTATTTCAACGACAAGTCTGTTCCTGCTTTAGAGATGAAGATCAAGAAATTGATGCCTATGGATGCTGAGTCTCG TGTCTATGATGCATTACAGAAGAAATACCTGAAGACACTTTTGTTCTGTGTGTGCAAGACTATAGATGGCCGGATGATCGAGGAGTACACATTTTCCTTC AGTTATTCTAATAATGAAAGTCAAGAGGTTTCAATGAATATCAATCGCACTGGAAACAAGAAGCAAGGAGGAACATTCAAGTGTAACTCTACAACTGAAA TTACTCCCAATCAGATGAGGAGTTCTGCTTGTAAAATGATCCGAACACTGGTCCAGCTGATGGGAACTCTGGATAAGATGCCTGAAGAGCGGACATTATT GATGAAGCTCCTCGACTATGATGATCCAGCAGATTATGAGCCTCCATTCTTCAGGGGCTGCACAGAAGAAGAAGCCCATAATGCATGGACTAAGCATCCT TTGCAAATGGAGGTTGGGAATGTCAACAGCAAGCATTTTGTATTAGCTCTCAAGGTGAAGAGTGTGCTTGACCCCTGTGAGGACGGGAATGATGATATAG AGGATGATGAATTTAGTTTAGGAGCTGATTCTGAACAAAGGGATGATTCTTCTGAATCTGACAATGAGGTTAACCAATCACAAGAAGATCAATACATAGT TGCAACTTGCAACAACAAGCAATGTCCAGAGGAAGACAATGGCATGGTTGATGAAGATGATACACAGGATCCAGCGGAAGATGAGCAGCAATTGGCTAGG GTGAAGGACTGGGTTAACAGTTACCATCTTGATACCATTGAGCTTACTGATGTTCTCTCTAATTTTCCAGACATCTCAGTGAACCGAGCAGGAAAAAGAA TTTTAGCGCAACTAGCGAAGGAATTCAATTTTAGACCTGACGGTATTTTTGTCTTGTTAATGCAGGTTTTGATTGAAGAAATCATGGACAATCTTGTAAA GGAAGGTGTTTTATTGAAAACTGGAACAGATGCTTACAGCAAAGCCAAGCAAAAGGCCTTTGAGTATGAGTTTCCTGTGGTGAAAGAGGAAATAGATGGT GACAAAGCTCCTCAGGTTGAGGATTTCGTGTACATGAAGGCGCTGTATCATGTGCTTCCAATGAAATATGTGACAATTGCAAAGCTTCAGAACAAGCTAG AAGGAGAAGCCAATCAGTCTACTGTGCGCAAATTAATTGATAAAATGACCCGAGATGGCTATCTTGAAGCCAAAGGAAACCGCAGGCTTGGCAAGCGTGT CACTCATTCTACTCTAACTGAGATAAAGCTTATGGAAGTCAGGAGATTCTTGGGAAATGATGCTATGGTGATTTGTTGGAATGATTACAAGGATGGCTCA ACATGTGGTGTCCTCCACTCCATTGGTTCAGATCTTACGCGCATGAAGATCAAATCAGAAATAAATCAAAATGGATCAACTAGGAGTGAACAGACTATCT CTAAGACAAGGAACCATGGAAACACTCCCACAAGCGGGGCTGAGCCTGTTGCTTCTTCAAGAGAGAGTGTCTTTCCAGGAAAGGAGAATGCCAGAGCAAA TGGAAACACGAATTACTTCGACGAGGCAGATACAGTTATCTGCAGCAGATCCTCTCAAGATAAGCGGTCCAGAAAGACAAGCACGGTTAAGGAGCCTATT ATTCAGTCTCTGAAGCGCCAGAAATCCCAAGCTGTCTGA
AA sequence Show only first row Show all	>Potri.001G055201.1 pacid=42787928 polypeptide=Potri.001G055201.1.p locus=Potri.001G055201 ID=Potri.001G055201.1.v4.1 annot-version=v4.1 MVVAQKVKEAEITQQDSLLLTRNLLRIAIFNISYIRGLFPEKYFNDKSVPALEMKIKKLMPMDAESRVYDALQKKYLKTLLFCVCKTIDGRMIEEYTFSF SYSNNESQEVSMNINRTGNKKQGGTFKCNSTTEITPNQMRSSACKMIRTLVQLMGTLDKMPEERTLLMKLLDYDDPADYEPPFFRGCTEEEAHNAWTKHP LQMEVGNVNSKHFVLALKVKSVLDPCEDGNDDIEDDEFSLGADSEQRDDSSESDNEVNQSQEDQYIVATCNNKQCPEEDNGMVDEDDTQDPAEDEQQLAR VKDWVNSYHLDTIELTDVLSNFPDISVNRAGKRILAQLAKEFNFRPDGIFVLLMQVLIEEIMDNLVKEGVLLKTGTDAYSKAKQKAFEYEFPVVKEEIDG DKAPQVEDFVYMKALYHVLPMKYVTIAKLQNKLEGEANQSTVRKLIDKMTRDGYLEAKGNRRLGKRVTHSTLTEIKLMEVRRFLGNDAMVICWNDYKDGS TCGVLHSIGSDLTRMKIKSEINQNGSTRSEQTISKTRNHGNTPTSGAEPVASSRESVFPGKENARANGNTNYFDEADTVICSRSSQDKRSRKTSTVKEPI IQSLKRQKSQAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Potri.001G055201 [exp]	0	1
AT5G66160		JR700, ATRMR1	ARABIDOPSIS THALIANA RECEPTOR ...		Potri.005G111100 [exp]	2.00	0.9725
AT1G30760			FAD-binding Berberine family p...		Potri.011G158800 [exp]	3.31	0.9101
AT1G53035			unknown protein		Potri.001G399900 [exp]	3.46	0.9473
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G006100 [exp]	3.74	0.9318
AT5G13500			unknown protein		Potri.001G028100 [exp]	4.89	0.9356
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.004G093500 [exp]	7.41	0.9387
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.005G093800 [exp]	8.66	0.8992
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.002G214200 [exp]	9.38	0.8661
					Potri.007G088800 [exp]	10.81	0.9308
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.014G142400 [exp]	14.69	0.8847

Compare expression of checked genes

Potri.001G055201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.