Plant FIBer expression Database

Potri.001G055300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67360 252 / 5e-85 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2)
AT3G05500 144 / 2e-42 Rubber elongation factor protein (REF) (.1)
AT2G47780 131 / 1e-37 Rubber elongation factor protein (REF) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G173100
[exp]
369 / 5e-131 AT1G67360 239 / 7e-80 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2)
Potri.002G206000
[exp]
156 / 3e-47 AT3G05500 238 / 4e-79 Rubber elongation factor protein (REF) (.1)
Potri.005G025700
[exp]
156 / 3e-47 AT3G05500 277 / 1e-94 Rubber elongation factor protein (REF) (.1)
Potri.013G017300
[exp]
150 / 5e-45 AT3G05500 258 / 6e-87 Rubber elongation factor protein (REF) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015786
[exp]
280 / 2e-88 AT1G67370 600 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
Lus10037019
[exp]
273 / 9e-85 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
Lus10020648
[exp]
156 / 3e-47 AT3G05500 317 / 2e-110 Rubber elongation factor protein (REF) (.1)
Lus10029892
[exp]
152 / 1e-45 AT3G05500 317 / 3e-110 Rubber elongation factor protein (REF) (.1)
Lus10015171
[exp]
145 / 3e-43 AT3G05500 282 / 1e-96 Rubber elongation factor protein (REF) (.1)
Lus10031493
[exp]
146 / 3e-42 AT3G05500 285 / 4e-96 Rubber elongation factor protein (REF) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05755 REF Rubber elongation factor protein (REF)
Representative CDS sequence
>Potri.001G055300.2 pacid=42788957 polypeptide=Potri.001G055300.2.p locus=Potri.001G055300 ID=Potri.001G055300.2.v4.1 annot-version=v4.1
ATGGAGGTAGAGAACAGCAAAAGGAAAGATTTAGATCTGAAGCACTTGGGGTTTGTGAGGATAGCTGCGATTCAGGTTTTGGTTTGCGTTTCCAATCTTT
ACGATTATGCGAAACGCAACTCTGGGCCTTTGAGATCTGCTGTTGGAACTGTTGAGGGTACTGTTAATGCTGTGGTGGGTCCTGTTTATGAGAAATTCAA
GGGCGTCCCCGATCATCTTCTTGTCTTTCTTGATCACAAGGTAGATGAAGCAACAATCAAGTTTGATAAGCGTGCTCCTCCTGTTGCTAAGCAAGTTGTG
AGCCAAGCACGCTATTTGATCGAGAAAGCGTCGGAAAAGGCCAAAGTGCTTGCGAACGAATTTCAAGCTGGAGGACCACGTGCTGCTGTGCATTATGTAT
CTACAGAGTCCAAGCATTTATTCCTCACTGAATCTGTGAAGGTATGGGTTAAACTCGACCAGTATCCTTCGGTCCACAAAGTTGCAGAGGTGGCTGTTCC
CACAGCCGCGCATTGGTCAGAGAAGTACAACCATTTCGTCAAGGAGATGAGCCAGAAGGGTTATGTAGTGTTTGGTTACCTGCCTGTGGTTCCAGTCGAT
GAGATCTCCAACGCATTCAAGCAAGGTGAAGCAGAGAAGAAAGAAGATGCAACTGCACATAAAGATTCGGATTCGTCAGACTCTGATTAA
AA sequence
>Potri.001G055300.2 pacid=42788957 polypeptide=Potri.001G055300.2.p locus=Potri.001G055300 ID=Potri.001G055300.2.v4.1 annot-version=v4.1
MEVENSKRKDLDLKHLGFVRIAAIQVLVCVSNLYDYAKRNSGPLRSAVGTVEGTVNAVVGPVYEKFKGVPDHLLVFLDHKVDEATIKFDKRAPPVAKQVV
SQARYLIEKASEKAKVLANEFQAGGPRAAVHYVSTESKHLFLTESVKVWVKLDQYPSVHKVAEVAVPTAAHWSEKYNHFVKEMSQKGYVVFGYLPVVPVD
EISNAFKQGEAEKKEDATAHKDSDSSDSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67360 Rubber elongation factor prote... Potri.001G055300
[exp]
0 1
AT5G47120 ATBI-1, ATBI1 ARABIDOPSIS BAX INHIBITOR 1, B... Potri.001G151800
[exp]
3.46 0.8013 ATBI.1
AT3G13570 SCL30A, At-SCL3... SC35-like splicing factor 30A ... Potri.016G062500
[exp]
5.29 0.7966
AT4G15470 Bax inhibitor-1 family protein... Potri.008G199200
[exp]
7.07 0.8146
AT2G41430 LSR1, CID1, ERD... CTC-Interacting Domain 1, dehy... Potri.003G202500
[exp]
8.83 0.7612
AT2G46080 unknown protein Potri.014G088600
[exp]
12.56 0.8107
AT1G53400 Ubiquitin domain-containing pr... Potri.011G107700
[exp]
16.12 0.7334
AT5G19070 SNARE associated Golgi protein... Potri.008G202600
[exp]
16.97 0.7371
AT5G17210 Protein of unknown function (D... Potri.019G048300
[exp]
17.00 0.7054
AT5G49610 F-box family protein (.1) Potri.007G027300
[exp]
18.97 0.6542
AT2G20280 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.006G132800
[exp]
21.42 0.6601

Potri.001G055300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.