Plant FIBer expression Database

Potri.001G055500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G04280 80 / 4e-18 ARR22 response regulator 22 (.1.2.3)
AT5G26594 80 / 5e-18 ARR24 response regulator 24 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G172200
[exp]
276 / 8e-91 AT3G04280 63 / 6e-12 response regulator 22 (.1.2.3)
Potri.003G172932
[exp]
275 / 5e-90 AT5G26594 71 / 6e-15 response regulator 24 (.1)
Potri.019G024900
[exp]
117 / 7e-32 AT5G26594 121 / 2e-36 response regulator 24 (.1)
Potri.003G177300
[exp]
119 / 8e-32 AT3G04280 96 / 8e-25 response regulator 22 (.1.2.3)
Potri.001G055600
[exp]
117 / 1e-30 AT5G26594 72 / 7e-16 response regulator 24 (.1)
Potri.019G025000
[exp]
101 / 4e-26 AT5G26594 117 / 2e-34 response regulator 24 (.1)
Potri.003G177400
[exp]
96 / 1e-22 AT3G04280 99 / 9e-26 response regulator 22 (.1.2.3)
Potri.009G108000
[exp]
91 / 2e-22 AT5G26594 163 / 5e-53 response regulator 24 (.1)
Potri.002G253000
[exp]
87 / 8e-21 AT5G26594 171 / 5e-56 response regulator 24 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004775
[exp]
78 / 1e-17 AT5G26594 98 / 2e-27 response regulator 24 (.1)
Lus10005407
[exp]
75 / 4e-16 AT5G26594 135 / 2e-41 response regulator 24 (.1)
Lus10028021
[exp]
52 / 3e-08 AT5G26594 99 / 3e-27 response regulator 24 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0304 CheY PF00072 Response_reg Response regulator receiver domain
Representative CDS sequence
>Potri.001G055500.2 pacid=42791973 polypeptide=Potri.001G055500.2.p locus=Potri.001G055500 ID=Potri.001G055500.2.v4.1 annot-version=v4.1
ATGTTGGCATCAAAGATCAAACTCAAACTGATGTTGACAGCAGTACCCGAATTGCCAGAAATGGCTGTTTCTGTTGAAAAATTCATTCAAAGGATCAATG
TATCTCCCGGGATAAGCAGGGAGACAATCGAAGCAATGAGCGAAGCAGTCAAGAAAAGCTCCGAAGCCCATAGGTTACTAGCTGACGAAGCCACCAAAAT
TTATCATGAAGCGGTCAGGGAAAGCTCCCAAGCCCGTATGTTACAAGCTGACGAAGCCACCAAAATTTATCCTGAACTTGAGAATACATTTGCAAAACTG
AATGATACCAATTCTGAAATGGATCGACGGGTGCTTGAATCTGCCAATAAGATCATGGAACTGAAGAAAGGCCGAGAAGAATCCATGAAGTTATTCAATG
AGACGAGGGATATCAGTCATGCAAGAAACCATAGTAAAGTAAGAGGAAAGATTGATTCTGTGAATCACTGGCTGAAAAAAAAGATTATCGACATTGATGA
AACCATGAAAGAGGAAGATAGTGCAACTGGATTTGATCATTCTGCTACTCTTGGAAAGGAGCAAGATGTTCTTGGTTTGAGGAATGGCAGTGACGACACA
GAGGGAAGCCGAAAAGGGCAGAAACTAGGGCATGAACCTCACAAGTTCTCTGTGCTTCTCGTGGAATATGACACTTCTGCTCGAATACACAACAAGACGC
AGATAATCCAATTTATAGGGAGAAATAATCTTGGGGTGAAATTTCAAGTTGCCGAAAATGGACAGCAAGCTGTTGATCTTCATAGTCGTGACAAGGCTTC
TTTTAACCTCATTCTCATGGATATGGATATGCCTGTTCACGTTGCCACTGGGCCTGAGGCAACAAGATCGCTGCGAGCCCTCGGTGTGAAGAGTAAGATT
GTTGGTTTCAGCTCCGAGTCTGAATCTGAGAAGATAGATCAGTTCATTAGTGCAGGCCTAAATGGATGCTTTAAAAAGCCACTGACTGTCGAAAAGATTG
CTCCTTTCCTTCCTCCTCCCAGTTCCCAACAGGCAATAACTGACTCACCGCAGGAAGACAAAGGGCTGATTGATCCCTAA
AA sequence
>Potri.001G055500.2 pacid=42791973 polypeptide=Potri.001G055500.2.p locus=Potri.001G055500 ID=Potri.001G055500.2.v4.1 annot-version=v4.1
MLASKIKLKLMLTAVPELPEMAVSVEKFIQRINVSPGISRETIEAMSEAVKKSSEAHRLLADEATKIYHEAVRESSQARMLQADEATKIYPELENTFAKL
NDTNSEMDRRVLESANKIMELKKGREESMKLFNETRDISHARNHSKVRGKIDSVNHWLKKKIIDIDETMKEEDSATGFDHSATLGKEQDVLGLRNGSDDT
EGSRKGQKLGHEPHKFSVLLVEYDTSARIHNKTQIIQFIGRNNLGVKFQVAENGQQAVDLHSRDKASFNLILMDMDMPVHVATGPEATRSLRALGVKSKI
VGFSSESESEKIDQFISAGLNGCFKKPLTVEKIAPFLPPPSSQQAITDSPQEDKGLIDP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G26594 ARR24 response regulator 24 (.1) Potri.001G055500
[exp]
0 1
AT5G42240 SCPL42 serine carboxypeptidase-like 4... Potri.005G187700
[exp]
10.00 0.6742
AT1G77410 BGAL16 beta-galactosidase 16 (.1) Potri.004G036000
[exp]
12.44 0.6741
AT5G26594 ARR24 response regulator 24 (.1) Potri.019G024900
[exp]
15.42 0.6687
AT3G19280 FUCTA, FUCT1, A... fucosyltransferase 11 (.1) Potri.019G091200
[exp]
16.49 0.6687 FUCT3.1
AT5G28780 PIF1 helicase (.1) Potri.011G042150
[exp]
18.43 0.6687
AT2G35615 Eukaryotic aspartyl protease f... Potri.003G105300
[exp]
28.14 0.6085
Potri.004G208200
[exp]
29.69 0.5068
Potri.010G007833
[exp]
31.24 0.6379
AT4G21410 CRK29 cysteine-rich RLK (RECEPTOR-li... Potri.011G028700
[exp]
32.17 0.5873
AT3G22640 PAP85 cupin family protein (.1) Potri.005G212333
[exp]
57.13 0.4923

Potri.001G055500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.