Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29790 56 / 2e-08 unknown protein AT2G19390 54 / 8e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172800 [exp] 120 / 2e-30 AT3G04280 76 / 2e-16 response regulator 22 (.1.2.3) Potri.001G055625 [exp] 105 / 4e-27 AT4G29790 45 / 7e-06 unknown protein Potri.003G172866 [exp] 107 / 1e-25 AT3G04280 85 / 2e-19 response regulator 22 (.1.2.3) Potri.003G172701 [exp] 67 / 3e-12 AT4G29790 53 / 1e-07 unknown protein Potri.018G056400 [exp] 62 / 2e-10 AT2G19390 1022 / 0.0 unknown protein Potri.006G146700 [exp] 58 / 7e-10 AT4G29790 203 / 2e-60 unknown protein Potri.006G146600 [exp] 58 / 5e-09 AT2G19390 1068 / 0.0 unknown protein Potri.003G177400 [exp] 46 / 1e-05 AT3G04280 99 / 9e-26 response regulator 22 (.1.2.3) Potri.003G172200 [exp] 44 / 0.0001 AT3G04280 63 / 6e-12 response regulator 22 (.1.2.3)
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G055650.1 pacid=42793581 polypeptide=Potri.001G055650.1.p locus=Potri.001G055650 ID=Potri.001G055650.1.v4.1 annot-version=v4.1 ATGGCAGACAAAGATCAGACCCCAATTGATCAAGACAGGGTGAATTTCATTCAACCCATGCTTTCTGATTCAGAAGTGATGGATACAGATCACCATAAGT CTAGTCTTCAAGGGGGCTTTGAGCACCAGATGAATACTTCTCTTGGGATTTCAGCGGATGGCTTTCTTGGTTCTTTGAGTCCCTTGCATGAGAAAATGGA GCGAGCCAAGGGTGGTTTACTAGAAGGGGCCAGGCAATTTTCAGTGATTGTCAAAGAAGCCCTATCTGTGCTGGAAAATTTTTGCCCAAGTACTTCACCA TCAAATTTAATTGATATTGATGAATCCGATAATAAAGAAGACAATGGCACTGGATCTGATCATTCTGGAGATCAAGGGAAGGGAGGACCTACGCCTAGTA AGAAGCGTGCTAAAGGAGAGACAGACGAGCCGAGAAAAAGGCAGAAATTAGAGCCTGGAGAAGCCATGGGTAGCTCACAGAGTTCAAGTATCACCAGCAA CAATTTTTCTTCTCTGAAAAAGAAGGCAACTAACCCTGAAGTTGAGTCTCTAATTACAATACTTCGTCGTTCCCTTGAACTCCTTAAACAACAGGACAAA AGTATGGATGACATGAAGGTAACAACCAACCATGATATAGAAGCGAATAGTATCCGGAAGTTGTTAAATAATGGCTTACAACCTGGTACTGGAAGGAGCA AGCTTGCAGAAGAGGCAGACATTCGTCATGCCAAGCAGTGGATGAAAGAAGTGGATTTAGAGTCTGAAGAAGAATCACAAAGCTTAACCCCTTGTAAGAA GCTCTTAGTGCTTGTTATGGCTGATCCTCTTGCTCAAATACTGTACATGAGGCTGTTCAACCAGTTAGGGAAGCAAGAAAATATTGCAATGGAATTTCAG GTGGCCAAAACATTTGAAGAAGCTGTTGAATGTCTCTGCGATTACGGAGATTCTTTTAATCTCATTCTTATGGACATGGAAATGCGTCGCTGCAACTCCT CTAAGCTTACGCGCATCACGACTAATTCCCGGACCTACTAA
AA sequence Show only first row Show all	>Potri.001G055650.1 pacid=42793581 polypeptide=Potri.001G055650.1.p locus=Potri.001G055650 ID=Potri.001G055650.1.v4.1 annot-version=v4.1 MADKDQTPIDQDRVNFIQPMLSDSEVMDTDHHKSSLQGGFEHQMNTSLGISADGFLGSLSPLHEKMERAKGGLLEGARQFSVIVKEALSVLENFCPSTSP SNLIDIDESDNKEDNGTGSDHSGDQGKGGPTPSKKRAKGETDEPRKRQKLEPGEAMGSSQSSSITSNNFSSLKKKATNPEVESLITILRRSLELLKQQDK SMDDMKVTTNHDIEANSIRKLLNNGLQPGTGRSKLAEEADIRHAKQWMKEVDLESEEESQSLTPCKKLLVLVMADPLAQILYMRLFNQLGKQENIAMEFQ VAKTFEEAVECLCDYGDSFNLILMDMEMRRCNSSKLTRITTNSRTY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29790			unknown protein		Potri.001G055650 [exp]	0	1
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Potri.006G108000 [exp]	12.96	0.9516
AT2G20870			cell wall protein precursor, p...		Potri.013G144200 [exp]	18.54	0.9498
AT4G33355			Bifunctional inhibitor/lipid-t...		Potri.014G046500 [exp]	22.58	0.9494
					Potri.011G073116 [exp]	26.07	0.9494
					Potri.014G075251 [exp]	29.15	0.9494
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.004G054600 [exp]	32.31	0.9492
AT1G24480			S-adenosyl-L-methionine-depend...		Potri.015G088400 [exp]	35.49	0.8634
					Potri.007G113350 [exp]	35.49	0.9491
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128400 [exp]	37.62	0.9491
AT1G33811			GDSL-like Lipase/Acylhydrolase...		Potri.013G102400 [exp]	39.79	0.9490

Compare expression of checked genes

Potri.001G055650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.