Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62940 786 / 0 ACOS5 acyl-CoA synthetase 5 (.1) AT3G21240 364 / 4e-119 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 355 / 1e-115 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT4G05160 348 / 4e-113 AMP-dependent synthetase and ligase family protein (.1) AT1G65060 344 / 2e-111 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT1G20510 331 / 1e-106 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT3G21230 324 / 2e-103 4CL5 4-coumarate:CoA ligase 5 (.1) AT1G20480 322 / 1e-102 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 301 / 1e-94 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 281 / 7e-87 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172651 [exp] 392 / 7e-133 AT1G62940 324 / 4e-107 acyl-CoA synthetase 5 (.1) Potri.001G036900 [exp] 371 / 6e-122 AT3G21240 768 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.003G188500 [exp] 356 / 4e-116 AT3G21240 741 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.006G169700 [exp] 353 / 4e-115 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.018G094200 [exp] 347 / 2e-112 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.019G049500 [exp] 341 / 6e-110 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.017G112800 [exp] 335 / 6e-108 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 326 / 1e-104 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.008G031500 [exp] 323 / 4e-103 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025842 [exp] 797 / 0 AT1G62940 793 / 0.0 acyl-CoA synthetase 5 (.1) Lus10038259 [exp] 766 / 0 AT1G62940 769 / 0.0 acyl-CoA synthetase 5 (.1) Lus10026143 [exp] 362 / 2e-118 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10005390 [exp] 362 / 3e-118 AT1G51680 827 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10008677 [exp] 358 / 7e-117 AT1G51680 834 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10024123 [exp] 352 / 1e-114 AT3G21240 835 / 0.0 4-coumarate:CoA ligase 2 (.1) Lus10015998 [exp] 328 / 6e-105 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10016135 [exp] 326 / 2e-104 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 326 / 2e-104 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015999 [exp] 319 / 2e-101 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G055700.1 pacid=42787976 polypeptide=Potri.001G055700.1.p locus=Potri.001G055700 ID=Potri.001G055700.1.v4.1 annot-version=v4.1 ATGTCAATCTCATACTCTCACCTGTCTCTTAATTACTGTCTAATTCCATGCACAAGACATGACCACAAGAAGTTTTTTACGATTTCACCTTCCTTTAAAA CACAGCTTAATTCTGCTGCCCTTCTTCACTGTCTCATATCCACCATGGGAACTCCCATTCCATGCTCAGCGCAAGAGGAGCACATTTTCCGAAGCCGACA TCCGGCGGTCCTGGTGCCAGACATCACACTCCCTGATTTTGTGCTCCAAGATGCTGAATTGTATGCTGACAAGGTAGCATTTGTGGAGGCTGCGACAGGA AAGACGTTTACTTACGCTGAGGTAGTTAGAGACACTAGGAGGTTCGCTAAGGCCTTGAGGTCTCTCGGCCTAAGAAAAGGACATGTGGTGGTTGTAGCTC TCCCAAATGTTGCTGAGTATGGCATTGTAGCACTAGGAATAATGGCTGCTGGCGGTGTGTTTTCGGGTGCTAATCCTACTGCACATGAATCAGAACTTAA GAAGCAGGCGGAGGCTGCAGATGCTAAGCTTATTGTCACAAATGACCTTAATTATGGAAAGGTGAAGGGTCTAGGGCTACCTGTAATCGTACTGGGTGAA GCATGCATTAGCACTGCCGTGAATTGGAATGAACTGCTTGATGCAGCTGACCGTGCAGGCGATACACTTGCTTATGAGGAAGTCCTCCAGAGTGATCTAT GTGCACTTCCATTCTCATCAGGCACCACAGGGATGTCAAAGGGTGTAATGCTAACCCATCGGAATCTGGTGGCTAATTTGTGCTCCAGTCTCTTCAGTGT AGGACCAGAAATGGTGGGTCAGGTTGCCACACTAGGCCTAATTCCATTCTTTCACATATATGGTATCACTGGAATATGTTGTGCCACCCTTAGGAACAAG GGGAAAGTAGTGGTGATGGGTAGGTTTGAACTCAGGACATTTCTGAATGCATTGATCACACAAGAGGTCAGTTTTGCACCAATTGTGCCACCAATAATTT TAGCCTTGGTTAAGAATCCAATAGTGGAGGAATTTGATCTCAGCAAGCTCAAACTCAAGGCTATTATGACGGCAGCAGCTCCACTCGCCCCGGAGCTGCT CACAGCCTTCGAAAACAAGTTCCCTGGCGTCCAGGTTCAAGAGGCATATGGACTGACAGAGCACAGCTGCATCACACTCACTCATGGGGATCCTAGTAAA GGCCATGGCATTGCAAAGAAAAACTCAGTAGGATTCCTCCTTCCAAATTTGGAAATCAAGTTCATCAATCCTGAAAACGGTCAATCTCTCCCTGAGAACA CCCCTGGTGAAATTTGTGTAAGAAGCCAGTGTGTTATGCAAGGTTACTACAACAACAAGGAGGAGACCGCCAGGACCATTGACGCTGATGGATGGCTGCA CACTGGTGACATTGGGTACATAGACAACGATGGAGATATCTTTATTGTGGATCGCATCAAAGAACTAATCAAGTACAAGGGTTTTCAAGTAGCTCCTGCT GAGCTAGAGGCTATCCTCTTCACCCATCCCTCAGTTGAAGATGCAGCTGTCGTGCCGTTGCCAGATGAAGAGGCAGGAGAGATCCCAGCTGCTTGTGTTG TGATGAGCAAAGGTGCCAAAGAAAGTGAAGAAGATATAATGGAGTTTGTTGCCTCTAATGTTGCTCATTACAAGAAAGTGAGAGTGGTGCAATTTGTGGA CAGCATACCAAAATCACCTTCAGGGAAAATAATGCGAAGGCTTCTTAAAGAGAAGATGGGGACTACCTCCAAAGCTAGCTAG
AA sequence Show only first row Show all	>Potri.001G055700.1 pacid=42787976 polypeptide=Potri.001G055700.1.p locus=Potri.001G055700 ID=Potri.001G055700.1.v4.1 annot-version=v4.1 MSISYSHLSLNYCLIPCTRHDHKKFFTISPSFKTQLNSAALLHCLISTMGTPIPCSAQEEHIFRSRHPAVLVPDITLPDFVLQDAELYADKVAFVEAATG KTFTYAEVVRDTRRFAKALRSLGLRKGHVVVVALPNVAEYGIVALGIMAAGGVFSGANPTAHESELKKQAEAADAKLIVTNDLNYGKVKGLGLPVIVLGE ACISTAVNWNELLDAADRAGDTLAYEEVLQSDLCALPFSSGTTGMSKGVMLTHRNLVANLCSSLFSVGPEMVGQVATLGLIPFFHIYGITGICCATLRNK GKVVVMGRFELRTFLNALITQEVSFAPIVPPIILALVKNPIVEEFDLSKLKLKAIMTAAAPLAPELLTAFENKFPGVQVQEAYGLTEHSCITLTHGDPSK GHGIAKKNSVGFLLPNLEIKFINPENGQSLPENTPGEICVRSQCVMQGYYNNKEETARTIDADGWLHTGDIGYIDNDGDIFIVDRIKELIKYKGFQVAPA ELEAILFTHPSVEDAAVVPLPDEEAGEIPAACVVMSKGAKESEEDIMEFVASNVAHYKKVRVVQFVDSIPKSPSGKIMRRLLKEKMGTTSKAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62940		ACOS5	acyl-CoA synthetase 5 (.1)		Potri.001G055700 [exp]	0	1
AT5G35110			unknown protein		Potri.018G113901 [exp]	6.78	0.9927
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Potri.007G042200 [exp]	8.48	0.9942
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Potri.016G068132 [exp]	12.68	0.9367
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.019G023014 [exp]	14.28	0.9927
					Potri.006G072950 [exp]	14.28	0.8974
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.019G023020 [exp]	17.54	0.9926
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.019G023006 [exp]	19.13	0.9918
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G151900 [exp]	19.49	0.9925
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G152300 [exp]	23.06	0.9918
					Potri.002G184550 [exp]	27.16	0.9914

Compare expression of checked genes

Potri.001G055700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.